Factsheet for Solyc11g066100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001182	Potato	cytosol	98.93	99.23
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	91.9	93.32
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	92.05	92.47
Solyc06g076020.2.1	Tomato	cytosol, nucleus, plastid, unclear	91.44	92.28
Solyc09g010630.2.1	Tomato	extracellular	90.52	91.22
Solyc03g117630.1.1	Tomato	cytosol	86.39	86.39
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	91.9	86.1
Solyc07g005820.2.1	Tomato	cytosol	82.42	82.42
Solyc08g082820.2.1	Tomato	extracellular	63.91	62.76
Solyc03g082920.2.1	Tomato	nucleus, plastid	63.46	62.22
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	58.87	62.2
Solyc01g099660.2.1	Tomato	extracellular	60.55	59.19
Solyc01g106260.2.1	Tomato	plastid	47.09	45.97
Solyc01g106210.2.1	Tomato	plastid	47.4	45.52
Solyc11g020040.1.1	Tomato	plastid	46.48	43.93
Solyc01g103450.2.1	Tomato	plastid	46.02	42.82

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4D9L9
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc11g066100.1	EnsemblPlants:Solyc11g066100.1.1
UniParc:UPI0002769CA7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:51773141..51775439

Molecular Weight (calculated)

71462.9 Da

IEP (calculated)

4.838

GRAVY (calculated)

-0.422

Length

654 amino acids

Sequence
(BLAST)

001: MAAAGKGEGP AIGIDLGTTY SCVGVWQHDR VEIIANDQGN RTTPSYVAFT DTERLIGDAA KNQVAMNPVN TVFDAKRLIG RRFSDPSVQS DMKLWPFKVI
101: PGPGDKPMIV VTYKGEEKQF SAEEISSMVL TKMKEIAEAY LGTTIKNAVV TVPAYFNDSQ RQATKDAGVI SGLNVMRIIN EPTAAAIAYG LDKKSTSTGE
201: KNVLIFDLGG GTFDVSLLTI EEGIFEVKAT AGDTHLGGED FDNRMVNHFV QEFKRKHKKD ISGNPRALRR LRTACERAKR TLSSTAQTTI EIDSLYEGID
301: FYTTITRARF EEMNMDLFRK CMEPVEKCLR DAKMDKSGVH DVVLVGGSTR IPKVQQLLQD FFNGKELCKS INPDEAVAYG AAVQAAILSG EGNEKVQDLL
401: LLDVTPLSLG LETAGGVMTV LIPRNTTIPT KKEQVFSTYS DNQPGVLIQV YEGERARTKD NNLLGKFELS GIPPAPRGVP QINVCFDIDA NGILNVSAED
501: KTTGQKNKIT ITNDKGRLSK EEIERMVQEA EKYKSEDEEL KKKVEAKNGL ENYAYNMRNT IKDDKVSSQL PAADKKKIED AIDEAIKWLD SNQLAEADEF
601: EDKMKELESV CNPIIAKMYQ GGAGGATMDE DDGPSVGGGA GSASGAGPKI EEVD

Best Arabidopsis Sequence Match ( AT5G02490.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDASVQSDR QLWPFTIISG
101: TAEKPMIVVE YKGEEKQFAA EEISSMVLIK MREIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVLRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKQDIT GQPRALRRLR TACERAKRTL SSTAQTTIEI DSLYGGADFY
301: SPITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHEI VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVFE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGKKNKITIT NDKGRLSKED IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIR DEKIGEKLPA ADKKKVEDSI EEAIQWLDGN QLGEADEFED
601: KMKELESVCN PIIAKMYQGG AGGEAGGPGA SGMDEDEAPP ASGGAGPKIE EVD

Arabidopsis Description

MED37DProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:P22954]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.