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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, unclear, plastid, cytosol, nucleus

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, nucleus, plastid, unclear
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 22892874
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22892874 doi
EH Konozy, H Rogniaux, M Causse, M Faurobert
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400071337 Potato cytosol 98.62 98.92
KRH24810 Soybean nucleus 94.47 94.76
KRH29811 Soybean nucleus 94.16 94.45
Solyc10g086410.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, nucleus, unclear 92.78 93.79
Solyc11g066100.1.1 Tomato cytosol, unclear 92.47 92.05
Solyc06g076020.2.1 Tomato cytosol, nucleus, plastid, unclear 91.4 91.82
Solyc09g010630.2.1 Tomato extracellular 91.24 91.53
Os03t0277300-01 Rice plastid 90.48 90.2
Zm00001d047799_P002 Maize cytosol, extracellular, plasma membrane, plastid 90.17 90.03
EER92466 Sorghum cytosol 90.02 89.88
HORVU4Hr1G059260.1 Barley cytosol 90.63 89.8
TraesCS4D01G206600.1 Wheat cytosol 90.32 89.5
TraesCS4B01G205700.1 Wheat cytosol, golgi 90.17 89.35
TraesCS4A01G098600.1 Wheat cytosol 90.48 88.04
Solyc11g066060.1.1 Tomato extracellular, nucleus, unclear 92.63 86.39
Solyc03g117630.1.1 Tomato cytosol 86.48 86.09
Solyc07g005820.2.1 Tomato cytosol 82.95 82.57
Solyc08g082820.2.1 Tomato extracellular 64.21 62.76
Solyc03g082920.2.1 Tomato nucleus, plastid 63.59 62.07
Solyc06g052050.2.1 Tomato endoplasmic reticulum, nucleus, unclear 58.83 61.87
Solyc01g099660.2.1 Tomato extracellular 60.22 58.59
Solyc01g106260.2.1 Tomato plastid 47.62 46.27
Solyc01g106210.2.1 Tomato plastid 47.77 45.67
Solyc11g020040.1.1 Tomato plastid 46.7 43.93
Solyc01g103450.2.1 Tomato plastid 46.85 43.39
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
ncoils:CoilEMBL:FR828680GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
UniProt:H1ZXA9InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047
InterPro:IPR029048PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036
PANTHER:PTHR19375PANTHER:PTHR19375:SF323SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067EnsemblPlantsGene:Solyc04g011440.2
EnsemblPlants:Solyc04g011440.2.1UniParc:UPI0002459A4CSEG:seg:::
Description
Heat shock protein 70 isoform 3 [Source:UniProtKB/TrEMBL;Acc:H1ZXA9]
Coordinates
chr4:+:3894918..3898067
Molecular Weight (calculated)
71393.8 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.439
Length
651 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR FSDPSVQSDM KLWPFKVIPG
101: PADKPMIVVN YKGEEKQFSA EEISSMVLIK MKEIAEAFLG TTIKNAVVTV PAYFNDSQRQ ATKDAGTISG LNVMRIINEP TAAAIAYGLD KKSSSTGEKT
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KIDKSGVHDI VLVGGSTRIP KVQQLLQDFF NGRELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTRDNN LLGKFELTGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKAEDEEHKK KVEAKNALEN YAYNMRNTIK DDKIASKLSP DEKKKIEDSV EQAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGG AGPDMAGGMD EDGPSAGASS AGAGPKIEEV D
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.