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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 10
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum, nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
plastid: 20363867
extracellular: 20496099
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 20496099 doi
D Dahal, A Pich, HP Braun, K Wydra
Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031937 Potato extracellular 98.8 98.65
KRH60086 Soybean endoplasmic reticulum 94.14 93.86
VIT_02s0025g02140.t01 Wine grape endoplasmic reticulum 93.69 93.55
KRH41370 Soybean endoplasmic reticulum 92.94 92.8
Solyc03g082920.2.1 Tomato nucleus, plastid 91.89 91.75
Solyc06g052050.2.1 Tomato endoplasmic reticulum, nucleus, unclear 84.38 90.79
VIT_16s0098g01580.t01 Wine grape endoplasmic reticulum 90.84 90.7
GSMUA_Achr9P23710_001 Banana endoplasmic reticulum 82.88 90.49
GSMUA_Achr3P27250_001 Banana endoplasmic reticulum 81.38 90.18
Zm00001d014993_P001 Maize endoplasmic reticulum 89.34 89.74
Os02t0115900-02 Rice plasma membrane 89.49 89.62
TraesCS6D01G049100.1 Wheat golgi 89.49 89.62
TraesCS6B01G058300.1 Wheat endoplasmic reticulum 89.49 89.62
TraesCS6A01G042600.1 Wheat golgi 89.49 89.62
Zm00001d054043_P007 Maize endoplasmic reticulum 89.19 89.59
KRH60091 Soybean nucleus 93.69 89.02
KRH41372 Soybean endoplasmic reticulum 92.94 87.43
KXG29291 Sorghum plasma membrane 86.34 84.81
GSMUA_Achr4P11940_001 Banana cytosol 90.84 83.8
Solyc01g099660.2.1 Tomato extracellular 75.23 74.89
Solyc10g086410.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, nucleus, unclear 62.31 64.44
Solyc04g011440.2.1 Tomato cytosol, extracellular, nucleus, plastid, unclear 62.76 64.21
Solyc06g076020.2.1 Tomato cytosol, nucleus, plastid, unclear 62.31 64.04
Solyc11g066100.1.1 Tomato cytosol, unclear 62.76 63.91
Solyc09g010630.2.1 Tomato extracellular 62.16 63.79
Solyc03g117630.1.1 Tomato cytosol 62.01 63.15
GSMUA_Achr5P10770_001 Banana cytosol 68.77 62.06
Solyc07g005820.2.1 Tomato cytosol 60.81 61.93
Solyc11g066060.1.1 Tomato extracellular, nucleus, unclear 62.31 59.46
Solyc01g106260.2.1 Tomato plastid 48.5 48.21
Solyc01g106210.2.1 Tomato plastid 49.1 48.02
Solyc11g020040.1.1 Tomato plastid 47.9 46.1
Solyc01g103450.2.1 Tomato plastid 46.7 44.24
Protein Annotations
Gene3D:1.20.1270.10Gene3D:2.60.34.10Gene3D:3.30.420.40Gene3D:3.90.640.10MapMan:35.1ncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005788InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048UniProt:K4CPS8PFAM:PF00012
PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PFscan:PS51257PANTHER:PTHR19375
PANTHER:PTHR19375:SF317SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067SignalP:SignalP-noTMEnsemblPlantsGene:Solyc08g082820.2
EnsemblPlants:Solyc08g082820.2.1UniParc:UPI000276C8D6SEG:seg:::
Description
No Description!
Coordinates
chr8:+:65489311..65493585
Molecular Weight (calculated)
73205.1 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.449
Length
666 amino acids
Sequence
(BLAST)
001: MAACSRRGNS LVVLAIVLLG CLSALSNAKE EATKLGTVIG IDLGTTYSCV GVYKNGHVEI IANDQGNRIT PSWVAFTDNE RLIGEAAKNL AAVNPERTIF
101: DVKRLIGRKF EDKEVQRDMK LVPYKIVSKD GKPYIQVKIK DGEVKVFSPE EISAMILTKM KETAEAFLGK TIKDAVVTVP AYFNDAQRQA TKDAGVIAGL
201: NVARIINEPT AAAIAYGLDK KGGEKNILVF DLGGGTFDVS ILTIDNGVFE VLATNGDTHL GGEDFDQRIM EYFIKLIKKK HGKDISKDNR ALGKLRREAE
301: RAKRSLSSQH QVRVEIESLF DGTDFSEPLT RARFEELNND LFRKTMGPVK KAMDDAGLQK NQIDEIVLVG GSTRIPKVQQ LLKDYFDGKE PSKGVNPDEA
401: VAYGAAVQGG ILSGEGGDET KDILLLDVAP LTLGIETVGG VMTKLIPRNT VIPTKKSQVF TTYQDQQTTV SIQVFEGERS LTKDCRNLGK FDLTGIPPAP
501: RGTPQIEVTF EVDANGILNV KAEDKGTGKA EKITITNDKG RLSQEEIERM VREAEEFAEE DKKVKEKIDA RNALETYVYN MKNQINDKDK LADKLESDEK
601: EKIETATKEA LEWLDDNQSA EKEDYDEKLK EVEAVCNPII TAVYQRSGGA PGGGASEEED DSHDEL
Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)
001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL
Arabidopsis Description
BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.