CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
endoplasmic reticulum 3
mitochondrion 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60086	Soybean	endoplasmic reticulum	91.24	96.71
KRH41370	Soybean	endoplasmic reticulum	90.4	95.95
KRH60091	Soybean	nucleus	93.79	94.72
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	87.71	93.1
Solyc08g082820.2.1	Tomato	extracellular	87.43	92.94
PGSC0003DMT400031937	Potato	extracellular	86.86	92.2
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	78.11	92.01
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	79.1	91.8
Os02t0115900-02	Rice	plasma membrane	85.59	91.13
PGSC0003DMT400047710	Potato	endoplasmic reticulum	85.88	91.02
Zm00001d014993_P001	Maize	endoplasmic reticulum	85.17	90.95
Zm00001d054043_P007	Maize	endoplasmic reticulum	85.03	90.8
Solyc03g082920.2.1	Tomato	nucleus, plastid	85.45	90.7
CDX67525	Canola	endoplasmic reticulum	73.87	90.64
TraesCS6D01G049100.1	Wheat	golgi	85.03	90.53
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	85.03	90.53
TraesCS6A01G042600.1	Wheat	golgi	85.03	90.53
Bra028521.1-P	Field mustard	endoplasmic reticulum	84.75	90.23
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	84.75	89.95
CDY63497	Canola	endoplasmic reticulum	81.5	89.88
CDX77423	Canola	cytosol, endoplasmic reticulum	81.5	89.88
AT5G28540.1	Thale cress	endoplasmic reticulum	84.89	89.84
Bra015047.1-P	Field mustard	endoplasmic reticulum	84.18	89.49
CDX84809	Canola	endoplasmic reticulum	80.93	89.25
CDY23972	Canola	endoplasmic reticulum	80.93	89.25
Bra022819.1-P	Field mustard	endoplasmic reticulum	84.32	89.24
CDY13371	Canola	cytosol, endoplasmic reticulum	84.75	89.15
CDX79726	Canola	endoplasmic reticulum	80.79	89.1
CDY46766	Canola	endoplasmic reticulum	80.79	89.1
AT5G42020.3	Thale cress	endoplasmic reticulum	84.04	88.41
Bra023110.1-P	Field mustard	endoplasmic reticulum	79.38	87.54
KXG29291	Sorghum	plasma membrane	82.34	85.99
GSMUA_Achr4P11940_001	Banana	cytosol	87.57	85.87
KRH29811	Soybean	nucleus	58.76	64.1
KRH24810	Soybean	nucleus	58.62	63.94
KRH01631	Soybean	endoplasmic reticulum	58.62	63.94
KRH03029	Soybean	nucleus	58.19	63.88
KRH19702	Soybean	endoplasmic reticulum	56.5	63.29
KRG95806	Soybean	nucleus	58.33	63.15
KRH67530	Soybean	endoplasmic reticulum, nucleus	58.19	63.09
KRH70484	Soybean	cytosol	49.72	62.86
KRH72327	Soybean	endoplasmic reticulum	57.77	62.73
GSMUA_Achr5P10770_001	Banana	cytosol	64.83	62.2
KRH11084	Soybean	endoplasmic reticulum	49.01	54.13
KRH11083	Soybean	cytosol, endoplasmic reticulum	44.07	53.06
KRH49659	Soybean	endoplasmic reticulum	46.47	51.97
KRH01651	Soybean	cytosol	43.5	51.16
KRH01609	Soybean	cytosol	46.89	49.33
KRH01610	Soybean	cytosol, endoplasmic reticulum	46.05	48.44
KRH10640	Soybean	nucleus	45.48	47.77
KRH21710	Soybean	endoplasmic reticulum	45.34	47.63
KRH26302	Soybean	plastid	18.5	47.46
KRH49859	Soybean	endoplasmic reticulum, nucleus	45.2	47.27
KRH42039	Soybean	mitochondrion	45.06	47.12
KRH06058	Soybean	mitochondrion	43.79	44.99
KRH26303	Soybean	cytosol, endoplasmic reticulum	16.24	43.07
KRH21163	Soybean	endoplasmic reticulum	29.52	42.74
KRH70355	Soybean	cytosol	47.46	37.67

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EMBL:ACUP02004761
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G025900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783
GO:GO:0005788	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0034975	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	UniProt:I1KPN5
InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH41372	ProteinID:KRH41372	ProteinID:KRH41372.1	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF317
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TMHMM:TMhelix	UniParc:UPI000296B57F	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:2046591..2050474

Molecular Weight (calculated)

78063.0 Da

IEP (calculated)

4.866

GRAVY (calculated)

-0.424

Length

708 amino acids

Sequence
(BLAST)

001: MTCSYLRVST INGEVPAVNS IEPTIHRPSR KEEKKQGDII MACSFSRGSL LPLAIIVSLG CLFAISIAKE EATKLGTVIG IDLGTTYSCV GVYKNGHVEI
101: IANDQGNRIT PSWVAFTDSE RLIGEAAKNL AAVNPERVIF DVKRLIGRKF EDKEVQRDMK LVPYKIVNKD GKPYIQVKIK DGETKVFSPE EISAMILTKM
201: KETAEAFLGK KINDAVVTVP AYFNDAQRQA TKDAGVIAGL NVARIINEPT AAAIAYGLDK KGGEKNILVF DLGGGTFDVS ILTIDNGVFE VLATNGDTHL
301: GGEDFDQRIM EYFIKLINKK HKKDISKDSR ALGKLRREAE RAKRALSSQH QVRVEIESLF DGVDFSEPLT RARFEELNND LFRKTMGPVK KAMEDAGLQK
401: NQIDEIVLVG GSTRIPKVQQ LLKDYFDGKE PNKGVNPDEA VAYGAAVQGS ILSGEGGEET KDILLLDVAP LTLGIETVGG VMTKLIPRNT VIPTKKSQVF
501: TTYQDQQSTV SIQVFEGERS LTKDCRLLGK FELSGIPPAP RGTPQIEVTF EVDANGILNV KAEDKGTGKS EKITITNEKG RLSQEEIERM VREAEEFAEE
601: DKKVKERIDA RNSLETYVYN MKNQVSDKDK LADKLESDEK EKIETAVKEA LEWLDDNQSV EKEEYEEKLK EVEAVCNPII SAVYQRSGGA PGGGASGEDD
701: DEDSHDEL

Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL

Arabidopsis Description

BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.