CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21710	Soybean	endoplasmic reticulum	98.96	98.96
KRH42039	Soybean	mitochondrion	93.92	93.5
KRH49859	Soybean	endoplasmic reticulum, nucleus	93.92	93.5
VIT_03s0097g00530.t01	Wine grape	mitochondrion	90.65	89.99
PGSC0003DMT400027703	Potato	mitochondrion	87.98	87.59
Solyc01g106210.2.1	Tomato	plastid	88.43	87.52
Solyc01g106260.2.1	Tomato	plastid	85.91	86.42
PGSC0003DMT400008101	Potato	mitochondrion	86.35	86.35
CDX81132	Canola	mitochondrion	87.24	86.34
CDY56552	Canola	mitochondrion	87.09	86.2
Bra028628.1-P	Field mustard	mitochondrion	86.8	86.03
Os03t0113700-01	Rice	mitochondrion	86.2	85.95
GSMUA_Achr4P19830_001	Banana	mitochondrion	86.8	85.9
AT5G09590.1	Thale cress	mitochondrion	86.8	85.78
Bra006027.1-P	Field mustard	mitochondrion	86.65	85.76
CDX85810	Canola	mitochondrion	86.5	85.74
EER91365	Sorghum	mitochondrion	85.46	84.96
Os02t0774300-01	Rice	mitochondrion	85.46	84.83
Zm00001d013842_P003	Maize	mitochondrion	85.31	84.81
Zm00001d000295_P001	Maize	mitochondrion, plasma membrane	84.57	84.07
TraesCSU01G116400.1	Wheat	mitochondrion	83.53	83.78
TraesCS3D01G296700.1	Wheat	golgi	84.57	83.46
TraesCS3A01G305100.3	Wheat	mitochondrion	84.57	83.33
TraesCS4B01G397600.1	Wheat	mitochondrion	83.53	83.16
TraesCS3B01G331400.4	Wheat	mitochondrion	84.27	83.04
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	83.09	82.96
TraesCS1A01G295600.1	Wheat	mitochondrion	83.83	82.72
HORVU4Hr1G089090.8	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.75	81.39
HORVU3Hr1G073230.9	Barley	endoplasmic reticulum, golgi	83.68	80.8
HORVU0Hr1G006930.3	Barley	cytosol	56.97	80.17
CDY44807	Canola	mitochondrion	84.87	72.41
KRH06058	Soybean	mitochondrion	51.34	50.22
KRH26303	Soybean	cytosol, endoplasmic reticulum	19.44	49.06
KRH41370	Soybean	endoplasmic reticulum	48.37	48.88
KRH01631	Soybean	endoplasmic reticulum	47.03	48.84
KRH29811	Soybean	nucleus	46.88	48.69
KRH60086	Soybean	endoplasmic reticulum	48.22	48.65
KRH19702	Soybean	endoplasmic reticulum	45.55	48.58
KRH24810	Soybean	nucleus	46.74	48.54
KRH03029	Soybean	nucleus	46.29	48.37
KRH26302	Soybean	plastid	19.73	48.19
KRH70484	Soybean	cytosol	39.91	48.04
KRH67530	Soybean	endoplasmic reticulum, nucleus	45.99	47.47
KRG95806	Soybean	nucleus	45.99	47.4
KRH72327	Soybean	endoplasmic reticulum	45.85	47.39
KRH60091	Soybean	nucleus	48.07	46.22
KRH41372	Soybean	endoplasmic reticulum	47.77	45.48
KRH11084	Soybean	endoplasmic reticulum	41.69	43.84
KRH11083	Soybean	cytosol, endoplasmic reticulum	37.24	42.69
KRH49659	Soybean	endoplasmic reticulum	40.06	42.65
KRH01651	Soybean	cytosol	37.69	42.19
KRH01609	Soybean	cytosol	39.76	39.82
KRH01610	Soybean	cytosol, endoplasmic reticulum	39.32	39.38
KRH21163	Soybean	endoplasmic reticulum	24.63	33.95
KRH70355	Soybean	cytosol	40.06	30.27

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100814039	MapMan:19.1.3.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10
MapMan:7.11.2.2.5	EMBL:ACUP02009150	InterPro:Chaperone_DnaK	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G059900	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
UniProt:I1ME25	InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH10640	ProteinID:KRH10640	ProteinID:KRH10640.1
HAMAP:MF_00332	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF333	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	TIGRFAMs:TIGR02350
UniParc:UPI000233B5B2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:4634570..4638101

Molecular Weight (calculated)

72474.2 Da

IEP (calculated)

5.733

GRAVY (calculated)

-0.319

Length

674 amino acids

Sequence
(BLAST)

001: MASLLRSLRR RDVASASLSA YRSLTGSTKP AYVAHNWSSL SRPFSSRPAG NDVIGIDLGT TNSCVSVMEG KNPKVIENSE GARTTPSVVA FNQKGELLVG
101: TPAKRQAVTN PTNTLFGTKR LIGRRFDDAQ TQKEMKMVPF KIVKAPNGDA WVEANGQQYS PSQIGAFVLT KMKETAEAYL GKSISKAVIT VPAYFNDAQR
201: QATKDAGRIA GLDVQRIINE PTAAALSYGM NKKEGLIAVF DLGGGTFDVS ILEISNGVFE VKATNGDTFL GGEDFDNALL DFLVNEFKRT ESIDLAKDRL
301: ALQRLREAAE KAKIELSSTS QTEINLPFIT ADASGAKHLN ITLTRSKFEA LVNHLIERTK APCKSCLKDA NISIKDVDEV LLVGGMTRVP KVQEVVSEIF
401: GKSPSKGVNP DEAVAMGAAI QGGILRGDVK ELLLLDVTPL SLGIETLGGI FTRLINRNTT IPTKKSQVFS TAADNQTQVG IKVLQGEREM AADNKMLGEF
501: DLVGIPPAPR GLPQIEVTFD IDANGIVTVS AKDKSTGKEQ QITIRSSGGL SEDEIEKMVK EAELHAQKDQ ERKALIDIRN SADTTIYSIE KSLGEYRDKI
601: PSEVAKEIED AVSDLRKAMS EDNVDEIKSK LDAANKAVSK IGEHMSGGSS GGSSAGGSQG GDQAPEAEYE EVKK

Best Arabidopsis Sequence Match ( AT5G09590.1 )
(BLAST)

001: MATAALLRSI RRREVVSSPF SAYRCLSSSG KASLNSSYLG QNFRSFSRAF SSKPAGNDVI GIDLGTTNSC VAVMEGKNPK VIENAEGART TPSVVAFNTK
101: GELLVGTPAK RQAVTNPTNT VSGTKRLIGR KFDDPQTQKE MKMVPYKIVR APNGDAWVEA NGQQYSPSQI GAFILTKMKE TAEAYLGKSV TKAVVTVPAY
201: FNDAQRQATK DAGRIAGLDV ERIINEPTAA ALSYGMTNKE GLIAVFDLGG GTFDVSVLEI SNGVFEVKAT NGDTFLGGED FDNALLDFLV NEFKTTEGID
301: LAKDRLALQR LREAAEKAKI ELSSTSQTEI NLPFITADAS GAKHFNITLT RSRFETLVNH LIERTRDPCK NCLKDAGISA KEVDEVLLVG GMTRVPKVQS
401: IVAEIFGKSP SKGVNPDEAV AMGAALQGGI LRGDVKELLL LDVTPLSLGI ETLGGVFTRL ITRNTTIPTK KSQVFSTAAD NQTQVGIRVL QGEREMATDN
501: KLLGEFDLVG IPPSPRGVPQ IEVTFDIDAN GIVTVSAKDK TTGKVQQITI RSSGGLSEDD IQKMVREAEL HAQKDKERKE LIDTKNTADT TIYSIEKSLG
601: EYREKIPSEI AKEIEDAVAD LRSASSGDDL NEIKAKIEAA NKAVSKIGEH MSGGSGGGSA PGGGSEGGSD QAPEAEYEEV KK

Arabidopsis Description

HSP70-10Heat shock 70 kDa protein 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.