CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01651	Soybean	cytosol	72.99	76.74
KRH24810	Soybean	nucleus	66.03	64.41
KRH70355	Soybean	cytosol	90.68	64.35
KRH29811	Soybean	nucleus	65.72	64.1
KRH01631	Soybean	endoplasmic reticulum	65.56	63.94
KRG95806	Soybean	nucleus	65.4	63.3
TraesCS6A01G342200.1	Wheat	cytosol, peroxisome, plastid	53.4	63.3
KRH67530	Soybean	endoplasmic reticulum, nucleus	65.24	63.25
KRH19702	Soybean	endoplasmic reticulum	63.03	63.13
KRH03029	Soybean	nucleus	64.3	63.1
TraesCS6B01G374500.1	Wheat	cytosol	45.97	62.85
KRH70484	Soybean	cytosol	54.98	62.14
KRH72327	Soybean	endoplasmic reticulum	63.98	62.12
TraesCS2A01G507000.2	Wheat	cytosol	47.39	61.86
HORVU2Hr1G112630.2	Barley	cytosol	49.45	61.74
TraesCS6D01G322700.1	Wheat	cytosol	43.6	61.47
GSMUA_Achr6P15270_001	Banana	cytosol	44.23	61.27
TraesCS4D01G207100.1	Wheat	cytosol	46.76	60.78
Os03t0276800-01	Rice	cytosol	53.71	60.71
TraesCS6A01G342500.1	Wheat	cytosol	51.5	60.04
TraesCS4B01G206400.1	Wheat	cytosol	55.61	59.86
TraesCS6B01G374600.1	Wheat	cytosol	48.34	59.77
TraesCS6B01G374400.1	Wheat	cytosol	51.66	59.24
Zm00001d028639_P001	Maize	cytosol	50.39	59.07
TraesCS6D01G322800.1	Wheat	cytosol	47.87	59.06
TraesCS4A01G098200.1	Wheat	cytosol	50.71	58.9
HORVU6Hr1G082510.2	Barley	cytosol	44.23	58.82
KXG39678	Sorghum	cytosol	51.66	58.81
EER95094	Sorghum	cytosol	51.66	58.6
TraesCS4A01G098100.1	Wheat	cytosol	54.34	58.5
KXG39675	Sorghum	cytosol	49.61	58.47
EER95091	Sorghum	cytosol	51.97	58.13
HORVU6Hr1G082600.1	Barley	cytosol, mitochondrion	44.23	57.85
OQU92816	Sorghum	cytosol	39.65	57.83
HORVU6Hr1G009570.1	Barley	cytosol	39.18	57.67
EER92471	Sorghum	cytosol	51.5	56.99
HORVU4Hr1G059210.1	Barley	cytosol, mitochondrion, plastid	41.07	56.03
Os11t0187600-01	Rice	cytosol	43.13	55.83
TraesCS6A01G342900.1	Wheat	cytosol	42.97	55.74
KRH01609	Soybean	cytosol	58.93	55.42
KXG39677	Sorghum	cytosol	48.03	55.27
TraesCS2B01G535000.2	Wheat	cytosol	46.45	55.06
TraesCS2A01G506900.1	Wheat	golgi, plastid, unclear	44.71	54.74
KRH01610	Soybean	cytosol, endoplasmic reticulum	57.98	54.53
EER95090	Sorghum	cytosol	48.82	54.12
KRH11084	Soybean	endoplasmic reticulum	54.03	53.35
HORVU6Hr1G094830.1	Barley	cytosol	51.03	53.12
Os11t0187500-01	Rice	cytosol, mitochondrion, plastid	48.34	53.03
TraesCS4B01G206300.1	Wheat	cytosol	52.76	52.35
TraesCS6D01G339700.1	Wheat	cytosol	49.29	51.91
KRH11083	Soybean	cytosol, endoplasmic reticulum	47.87	51.53
OQU92815	Sorghum	cytosol	30.65	50.92
KRH41370	Soybean	endoplasmic reticulum	52.29	49.63
KRH60086	Soybean	endoplasmic reticulum	51.97	49.25
KRH60091	Soybean	nucleus	52.13	47.08
KRH41372	Soybean	endoplasmic reticulum	51.97	46.47
KRH26302	Soybean	plastid	19.12	43.84
KRH49859	Soybean	endoplasmic reticulum, nucleus	43.13	40.33
KRH21710	Soybean	endoplasmic reticulum	42.81	40.21
KRH42039	Soybean	mitochondrion	42.97	40.18
KRH10640	Soybean	nucleus	42.65	40.06
KRH06058	Soybean	mitochondrion	42.65	39.19
KRH21163	Soybean	endoplasmic reticulum	29.23	37.83
TraesCS6D01G339800.1	Wheat	nucleus	45.66	36.44
TraesCS6D01G339600.1	Wheat	cytosol	50.39	34.38
KRH26303	Soybean	cytosol, endoplasmic reticulum	14.38	34.08

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102667572	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
MapMan:35.1	EMBL:ACUP02004582	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G170800	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	UniProt:K7L2A0	EnsemblPlants:KRH49659	ProteinID:KRH49659	ProteinID:KRH49659.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF247	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI000296B9CF	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:29468668..29471203

Molecular Weight (calculated)

70533.8 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.200

Length

633 amino acids

Sequence
(BLAST)

001: MICDFCFLKE NQIMAREYEG CAVGIDLGTT YSCVAVWLEQ HCRVEIIHND QGNNTTPSCV AFTDHQRLIG EAAKNQAATN PENTVFDAKR LIGRKFSDPV
101: IQKDKMLWPF KIVAGINDKP MISLNYKGQE KHLLAEEVSS MVLTKMREIA EAYLETPVKN AVVTVPAYFN DSQRKATIDA GSIAGLNVMR IINEPTAAAI
201: AYGLDKRTNC VGERSIFIFD LGGGTFDVSL LIIKDKVFRV KATAGNTHLG GEDFDNRMVN YFVQEFKRKN KVDISGNARA LRRLRSACER AKRILSYAVT
301: TNIEVDALFQ GIDFCSSITR AKFEEINMEL FEECMETVDR CLSDANMDKS SVHDVVLVGG SSRIPKVQEL LQDFFNGKIL CKSINPDEAV AYGAAVQAAL
401: LSKGIVNVPD LVLLDITPLS LGISLKGDLM SVVIPRNTTI PVKTTETYST AVDNQSAVLI EVYEGERTRA SDNNLLGFFR LSGIPPVPRN HLVYICFAID
501: ENGILSVSAE EKSTGNKNEI TITNDKERLS TKEIKRMIQE AEYYQAEDKK FLRKAKAMND LDCYVYKIKN ALKQKDISSK LCSKEKEDVS SAITRATDLL
601: EGNNQQDDIA VFEDNLKELE SIIERMKAMG KIV

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.