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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 9
  • extracellular 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, nucleus, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum, nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH41370 Soybean endoplasmic reticulum 98.35 98.5
VIT_02s0025g02140.t01 Wine grape endoplasmic reticulum 94.46 94.6
Solyc08g082820.2.1 Tomato extracellular 93.86 94.14
PGSC0003DMT400031937 Potato extracellular 93.26 93.4
GSMUA_Achr3P27250_001 Banana endoplasmic reticulum 83.53 92.85
GSMUA_Achr9P23710_001 Banana endoplasmic reticulum 84.73 92.79
KRH60091 Soybean nucleus 97.16 92.58
PGSC0003DMT400047710 Potato endoplasmic reticulum 92.07 92.07
Zm00001d014993_P001 Maize endoplasmic reticulum 91.17 91.86
CDX67525 Canola endoplasmic reticulum 79.34 91.85
Solyc03g082920.2.1 Tomato nucleus, plastid 91.47 91.6
Os02t0115900-02 Rice plasma membrane 91.17 91.58
Zm00001d054043_P007 Maize endoplasmic reticulum 90.87 91.55
Bra028521.1-P Field mustard endoplasmic reticulum 91.02 91.43
AT5G28540.1 Thale cress endoplasmic reticulum 91.47 91.33
VIT_16s0098g01580.t01 Wine grape endoplasmic reticulum 91.17 91.3
CDY63497 Canola endoplasmic reticulum 87.72 91.28
CDX77423 Canola cytosol, endoplasmic reticulum 87.72 91.28
KRH41372 Soybean endoplasmic reticulum 96.71 91.24
TraesCS6D01G049100.1 Wheat golgi 90.72 91.13
TraesCS6A01G042600.1 Wheat golgi 90.72 91.13
TraesCS6B01G058300.1 Wheat endoplasmic reticulum 90.72 91.13
CDX84809 Canola endoplasmic reticulum 87.43 90.97
CDY23972 Canola endoplasmic reticulum 87.43 90.97
Bra022819.1-P Field mustard endoplasmic reticulum 91.02 90.88
Bra015047.1-P Field mustard endoplasmic reticulum 90.42 90.69
CDX79726 Canola endoplasmic reticulum 87.13 90.65
CDY46766 Canola endoplasmic reticulum 87.13 90.65
CDY13371 Canola cytosol, endoplasmic reticulum 91.02 90.34
AT5G42020.3 Thale cress endoplasmic reticulum 90.27 89.6
Bra023110.1-P Field mustard endoplasmic reticulum 85.63 89.1
KXG29291 Sorghum plasma membrane 88.02 86.73
GSMUA_Achr4P11940_001 Banana cytosol 92.66 85.73
KRH29811 Soybean nucleus 62.57 64.41
KRH24810 Soybean nucleus 62.43 64.25
KRH01631 Soybean endoplasmic reticulum 62.43 64.25
KRH03029 Soybean nucleus 61.98 64.19
KRH19702 Soybean endoplasmic reticulum 60.03 63.45
KRH70484 Soybean cytosol 52.84 63.04
KRG95806 Soybean nucleus 61.68 63.0
KRH67530 Soybean endoplasmic reticulum, nucleus 61.53 62.94
KRH72327 Soybean endoplasmic reticulum 61.38 62.88
GSMUA_Achr5P10770_001 Banana cytosol 69.31 62.74
KRH11084 Soybean endoplasmic reticulum 51.65 53.82
KRH11083 Soybean cytosol, endoplasmic reticulum 46.56 52.89
KRH49659 Soybean endoplasmic reticulum 49.25 51.97
KRH01651 Soybean cytosol 46.56 51.66
KRH01609 Soybean cytosol 50.15 49.78
KRH01610 Soybean cytosol, endoplasmic reticulum 49.55 49.18
KRH10640 Soybean nucleus 48.65 48.22
KRH21710 Soybean endoplasmic reticulum 48.5 48.07
KRH26302 Soybean plastid 19.76 47.83
KRH49859 Soybean endoplasmic reticulum, nucleus 48.05 47.42
KRH42039 Soybean mitochondrion 47.9 47.27
KRH06058 Soybean mitochondrion 47.01 45.57
KRH26303 Soybean cytosol, endoplasmic reticulum 17.37 43.45
KRH21163 Soybean endoplasmic reticulum 30.84 42.13
KRH70355 Soybean cytosol 50.45 37.78
Protein Annotations
Gene3D:1.20.1270.10Gene3D:2.60.34.10Gene3D:3.30.420.40Gene3D:3.90.640.10MapMan:35.1EMBL:ACUP02003347
ncoils:CoilEnsemblPlantsGene:GLYMA_05G219400GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_famUniProt:I1K670InterPro:IPR029047
InterPro:IPR029048EnsemblPlants:KRH60086ProteinID:KRH60086ProteinID:KRH60086.1PFAM:PF00012PRINTS:PR00301
ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PFscan:PS51257PANTHER:PTHR19375PANTHER:PTHR19375:SF317
SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00023C4E0A
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr5:+:39891624..39895750
Molecular Weight (calculated)
73643.7 Da
IEP (calculated)
4.810
GRAVY (calculated)
-0.430
Length
668 amino acids
Sequence
(BLAST)
001: MAGSWARRSL IVLAIISFGC LFAISIAKEE ATKLGTVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVAFTDSER LIGEAAKNLA AVNPERTIFD
101: VKRLIGRKFE DKEVQRDMKL VPYKIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAFLGKK INDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSI LTIDNGVFEV LATNGDTHLG GEDFDQRIME YFIKLIKKKH GKDISKDNRA LGKLRREAER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMEDAGLQKS QIDEIVLVGG STRIPKVQQL LKDYFDGKEP NKGVNPDEAV
401: AYGAAVQGSI LSGEGGEETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLSGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKGTGKSE KITITNEKGR LSQEEIERMV REAEEFAEED KKVKERIDAR NSLETYVYNM KNQISDKDKL ADKLESDEKE
601: KIETAVKEAL EWLDDNQSME KEDYEEKLKE VEAVCNPIIS AVYQRSGGAP GGGGASGEED EDDSHDEL
Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)
001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL
Arabidopsis Description
BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.