CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23972	Canola	endoplasmic reticulum	100.0	100.0
CDX79726	Canola	endoplasmic reticulum	99.22	99.22
CDY46766	Canola	endoplasmic reticulum	98.91	98.91
CDY63497	Canola	endoplasmic reticulum	98.13	98.13
CDX77423	Canola	cytosol, endoplasmic reticulum	97.82	97.82
CDX67525	Canola	endoplasmic reticulum	86.6	96.36
Bra022819.1-P	Field mustard	endoplasmic reticulum	99.84	95.81
AT5G28540.1	Thale cress	endoplasmic reticulum	97.04	93.12
CDY13371	Canola	cytosol, endoplasmic reticulum	95.17	90.79
AT5G42020.3	Thale cress	endoplasmic reticulum	95.02	90.64
KRH41370	Soybean	endoplasmic reticulum	90.97	87.56
KRH60086	Soybean	endoplasmic reticulum	90.97	87.43
PGSC0003DMT400031937	Potato	extracellular	90.03	86.66
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	90.03	86.66
PGSC0003DMT400047710	Potato	endoplasmic reticulum	90.03	86.53
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	88.47	85.16
TraesCS6D01G049100.1	Wheat	golgi	88.16	85.11
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	88.16	85.11
TraesCS6A01G042600.1	Wheat	golgi	88.16	85.11
Os02t0115900-02	Rice	plasma membrane	88.16	85.11
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	80.37	84.59
Zm00001d014993_P001	Maize	endoplasmic reticulum	87.23	84.46
Zm00001d054043_P007	Maize	endoplasmic reticulum	86.92	84.16
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	78.19	83.53
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	80.06	83.04
KRH60091	Soybean	nucleus	90.34	82.74
KRH41372	Soybean	endoplasmic reticulum	89.25	80.93
KXG29291	Sorghum	plasma membrane	84.42	79.94
GSMUA_Achr4P11940_001	Banana	cytosol	87.54	77.84
CDY22648	Canola	cytosol	72.74	77.19
CDY06347	Canola	endoplasmic reticulum	72.27	72.27
CDY00784	Canola	cytosol	61.06	60.31
CDX73815	Canola	cytosol	61.22	60.28
CDY50531	Canola	cytosol	60.59	59.85
CDY52661	Canola	cytosol	60.28	59.81
CDY33359	Canola	cytosol	47.98	59.46
CDY35063	Canola	cytosol	47.66	59.07
CDX83960	Canola	cytosol	59.03	58.31
CDX96825	Canola	cytosol	59.03	58.31
GSMUA_Achr5P10770_001	Banana	cytosol	66.67	57.99
CDY49668	Canola	cytosol	40.81	52.61
CDY40362	Canola	cytosol, mitochondrion	36.14	51.1
CDY56552	Canola	mitochondrion	48.29	45.52
CDX81132	Canola	mitochondrion	48.29	45.52
CDY11007	Canola	cytosol	44.08	45.5
CDX85810	Canola	mitochondrion	47.98	45.29
CDY34275	Canola	cytosol	44.08	45.28
CDY24832	Canola	cytosol	44.08	45.28
CDY08914	Canola	cytosol	43.77	45.25
CDX90397	Canola	mitochondrion	46.88	44.4
CDX75683	Canola	mitochondrion	47.04	44.28
CDX69342	Canola	mitochondrion	46.88	44.26
CDY49682	Canola	mitochondrion	46.88	44.2
CDX92631	Canola	plastid	46.11	41.81
CDY03462	Canola	plastid	45.95	41.43
CDY03461	Canola	plastid	43.77	39.52
CDY44807	Canola	mitochondrion	47.04	38.23
CDY03459	Canola	cytosol	39.25	38.07
CDY49667	Canola	nucleus	2.34	20.0

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	GO:A0A078D911
UniProt:A0A078D911	EnsemblPlants:CDX84809	ProteinID:CDX84809	ProteinID:CDX84809.1	ProteinID:CDY23972.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00142110001	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PFscan:PS51257	PANTHER:PTHR19375
PANTHER:PTHR19375:SF317	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0004EE3EF9	SEG:seg	:	:	:	:

Description

BnaA03g14210DBnaA03g14210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D911]

Coordinates

chrLK031838:+:1360284..1363298

Molecular Weight (calculated)

70562.7 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.439

Length

642 amino acids

Sequence
(BLAST)

001: MARSFGANGT VVLAIIFFGC LFAFSTAKEE ATKLGTVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDNER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFA DKEVQKDRKL VPYQIVDKDG KPYIQVKIKD GETKVFSPEE VSAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIMD YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GLDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGNF DLTGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASEEFA EEDKKVKERI DARNSLETYV YNMKNQINDK DKLADKLEGD EKEKIEAATK EALEWLDENQ NSEKEEYDEK
601: LKEVEAVCNP IITAVYQRSG GAPGGAGGEG ATEEEDESHD EL

Best Arabidopsis Sequence Match ( AT5G28540.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL

Arabidopsis Description

MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.