CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50531	Canola	cytosol	22.67	2.62
CDY00784	Canola	cytosol	22.67	2.62
CDX73815	Canola	cytosol	22.67	2.61
CDX67525	Canola	endoplasmic reticulum	20.0	2.6
CDY63497	Canola	endoplasmic reticulum	21.33	2.49
CDX77423	Canola	cytosol, endoplasmic reticulum	21.33	2.49
CDY52661	Canola	cytosol	21.33	2.47
CDY13371	Canola	cytosol, endoplasmic reticulum	21.33	2.38
CDX79726	Canola	endoplasmic reticulum	20.0	2.34
CDX84809	Canola	endoplasmic reticulum	20.0	2.34
CDY23972	Canola	endoplasmic reticulum	20.0	2.34
CDY46766	Canola	endoplasmic reticulum	20.0	2.34
CDX83960	Canola	cytosol	20.0	2.31
CDX96825	Canola	cytosol	20.0	2.31
CDY06347	Canola	endoplasmic reticulum	18.67	2.18
CDY22648	Canola	cytosol	17.33	2.15
CDY03461	Canola	plastid	20.0	2.11
CDX92631	Canola	plastid	18.67	1.98
CDY03462	Canola	plastid	18.67	1.97
CDY03459	Canola	cytosol	17.33	1.96
CDX90397	Canola	mitochondrion	14.67	1.62
CDX69342	Canola	mitochondrion	14.67	1.62
CDX85810	Canola	mitochondrion	14.67	1.62
CDY49682	Canola	mitochondrion	14.67	1.62
CDX81132	Canola	mitochondrion	14.67	1.62
CDY56552	Canola	mitochondrion	14.67	1.62
CDX75683	Canola	mitochondrion	14.67	1.61
CDY08914	Canola	cytosol	13.33	1.61
CDY11007	Canola	cytosol	13.33	1.61
CDY24832	Canola	cytosol	13.33	1.6
CDY34275	Canola	cytosol	13.33	1.6
CDY44807	Canola	mitochondrion	14.67	1.39
CDY40362	Canola	cytosol, mitochondrion	5.33	0.88
CDY49668	Canola	cytosol	4.0	0.6
CDY33359	Canola	cytosol	4.0	0.58
CDY35063	Canola	cytosol	4.0	0.58

Protein Annotations

EnsemblPlants:CDY49667	EnsemblPlantsGene:GSBRNA2T00093543001	ProteinID:CDY49667	ProteinID:CDY49667.1	UniParc:UPI0004EE42F2	UniProt:A0A078II97
MapMan:35.2	:	:	:	:	:

Description

BnaC06g01960DBnaC06g01960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II97]

Coordinates

chrLK032851:+:18471..18698

Molecular Weight (calculated)

8259.9 Da

IEP (calculated)

12.159

GRAVY (calculated)

-0.685

Length

75 amino acids

Sequence
(BLAST)

1: MSRTGDSNDA SHRSGGLGSQ IYQIRAQSIQ PEPFRGLLEI LRSSHLVSAP EKPRTPLVSA RSGGIIQRHK AKRLR

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.