CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67525	Canola	endoplasmic reticulum	84.4	98.44
Bra028521.1-P	Field mustard	endoplasmic reticulum	96.88	98.05
CDY63497	Canola	endoplasmic reticulum	91.83	96.26
CDX77423	Canola	cytosol, endoplasmic reticulum	91.68	96.11
CDX79726	Canola	endoplasmic reticulum	90.94	95.33
AT5G28540.1	Thale cress	endoplasmic reticulum	94.65	95.22
CDY23972	Canola	endoplasmic reticulum	90.79	95.17
CDX84809	Canola	endoplasmic reticulum	90.79	95.17
CDY46766	Canola	endoplasmic reticulum	90.64	95.02
AT5G42020.3	Thale cress	endoplasmic reticulum	93.46	93.46
KRH41370	Soybean	endoplasmic reticulum	90.34	91.15
KRH60086	Soybean	endoplasmic reticulum	90.34	91.02
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	89.15	89.95
PGSC0003DMT400047710	Potato	endoplasmic reticulum	88.71	89.37
Os02t0115900-02	Rice	plasma membrane	88.11	89.17
PGSC0003DMT400031937	Potato	extracellular	88.26	89.06
Zm00001d014993_P001	Maize	endoplasmic reticulum	87.37	88.69
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	87.52	88.57
TraesCS6D01G049100.1	Wheat	golgi	87.52	88.57
TraesCS6A01G042600.1	Wheat	golgi	87.52	88.57
Zm00001d054043_P007	Maize	endoplasmic reticulum	87.22	88.54
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	79.94	88.2
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	87.37	88.16
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	78.31	87.69
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	79.79	86.75
KRH60091	Soybean	nucleus	89.3	85.73
KXG29291	Sorghum	plasma membrane	85.44	84.81
KRH41372	Soybean	endoplasmic reticulum	89.15	84.75
GSMUA_Achr4P11940_001	Banana	cytosol	87.52	81.58
CDY22648	Canola	cytosol	72.36	80.5
CDY06347	Canola	endoplasmic reticulum	71.92	75.39
CDY33359	Canola	cytosol	48.59	63.13
CDY00784	Canola	cytosol	60.77	62.92
CDX73815	Canola	cytosol	60.92	62.88
CDY35063	Canola	cytosol	48.29	62.74
CDY50531	Canola	cytosol	60.33	62.46
CDY52661	Canola	cytosol	60.03	62.44
GSMUA_Achr5P10770_001	Banana	cytosol	66.57	60.7
CDX96825	Canola	cytosol	58.4	60.46
CDX83960	Canola	cytosol	58.4	60.46
CDY49668	Canola	cytosol	41.75	56.43
CDY40362	Canola	cytosol, mitochondrion	37.0	54.85
CDX90397	Canola	mitochondrion	47.99	47.64
CDY34275	Canola	cytosol	43.98	47.36
CDY49682	Canola	mitochondrion	47.85	47.28
CDY11007	Canola	cytosol	43.69	47.27
CDX69342	Canola	mitochondrion	47.7	47.21
CDX75683	Canola	mitochondrion	47.7	47.07
CDX85810	Canola	mitochondrion	47.4	46.91
CDY24832	Canola	cytosol	43.54	46.88
CDY08914	Canola	cytosol	43.24	46.86
CDY56552	Canola	mitochondrion	47.25	46.7
CDX81132	Canola	mitochondrion	47.25	46.7
CDX92631	Canola	plastid	45.62	43.36
CDY03462	Canola	plastid	45.62	43.12
CDY03461	Canola	plastid	43.69	41.35
CDY44807	Canola	mitochondrion	46.51	39.62
CDY03459	Canola	cytosol	38.63	39.27
CDY49667	Canola	nucleus	2.38	21.33

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	GO:A0A078FJL2
UniProt:A0A078FJL2	EnsemblPlants:CDY13371	ProteinID:CDY13371	ProteinID:CDY13371.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00071395001	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF317	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE672C	SEG:seg

Description

BnaC06g13860DBnaC06g13860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJL2]

Coordinates

chrLK032034:+:707900..716064

Molecular Weight (calculated)

74472.6 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.444

Length

673 amino acids

Sequence
(BLAST)

001: MARSFGAVVL AIILFGFLFA SFSTAKEEEA TTKLGTVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVAFTDSER LIGSLYSKLF HAYLNKAAVN
101: PERTIFGVKR LIGRKFEDKE VQKDRKLVPY QIVNKDGKPY IQVKIKDGET KVFSPEEISA MILTKMKETA EAYLGKKIKD AVVTVPAYFN DAQRQATKDA
201: GVIAGLNVAR IINEPTAAAI AYGLDKKGGE KNILVFDLGG GTFDVSVLTI DNGVFEVLST NGDTHLGGED FDHRIMDYFI KLIKKKHQKD ISKDNKALGK
301: LRRECERAKR ALSSQHQVRV EIESLFDGVD FSEPLTRARF EELNNDLFRK TMGPVKKAMD DAGLQKSQID EIVLVGGSTR IPKVQQLLKD FFEGKEPNKG
401: VNPDEAVAYG AAVQGGILSG EGGDETKDIL LLDVAPLTLG IETVGGVMTK LIPRNTVIPT KKSQVFTTYQ DQQTTVSIQV FEGERSLTKD CRLLGKFDLT
501: GIPPAPRGTP QIEVTFEVDA NGILNVKAED KASGKSEKIT ITNEKGRLSQ EEIDRMVKEA EEFAEEDKKV KERIDARNSL ETYVYNMKNQ VSDKDKLADK
601: LEAEEKEKIE AATKEALEWL DENQNSEKEE YDEKLKEVEA VCNPIITAVY QRSGGAPGAS PSEDEEDESH DEL

Best Arabidopsis Sequence Match ( AT1G09080.2 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.