CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76646
CDX89142
CDY11430
CDY63310

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09080.1	CDX76646	AT3G62600.1	19763086
AT1G09080.1	CDX89142	AT3G62600.1	19763086
AT1G09080.1	CDY11430	AT3G62600.1	19763086
AT1G09080.1	CDY63310	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22648	Canola	cytosol	93.15	98.84
Bra031657.1-P	Field mustard	endoplasmic reticulum	99.53	94.95
AT1G09080.1	Thale cress	endoplasmic reticulum	88.78	84.44
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	77.26	76.43
CDX77423	Canola	cytosol, endoplasmic reticulum	72.9	72.9
CDX67525	Canola	endoplasmic reticulum	65.42	72.79
CDY63497	Canola	endoplasmic reticulum	72.59	72.59
CDX79726	Canola	endoplasmic reticulum	72.43	72.43
CDY46766	Canola	endoplasmic reticulum	72.43	72.43
CDY23972	Canola	endoplasmic reticulum	72.27	72.27
CDX84809	Canola	endoplasmic reticulum	72.27	72.27
PGSC0003DMT400063543	Potato	endoplasmic reticulum	75.08	72.05
CDY13371	Canola	cytosol, endoplasmic reticulum	75.39	71.92
Solyc01g099660.2.1	Tomato	extracellular	74.92	71.9
Os03t0710500-00	Rice	extracellular, plasma membrane	69.94	67.12
EER93587	Sorghum	endoplasmic reticulum	70.09	66.57
CDY52661	Canola	cytosol	57.63	57.19
CDY50531	Canola	cytosol	57.63	56.92
CDY00784	Canola	cytosol	57.48	56.77
CDX73815	Canola	cytosol	57.63	56.75
CDX83960	Canola	cytosol	56.39	55.69
CDX96825	Canola	cytosol	56.23	55.54
CDY33359	Canola	cytosol	44.39	55.02
CDY35063	Canola	cytosol	44.08	54.63
CDY49668	Canola	cytosol	40.19	51.81
CDY40362	Canola	cytosol, mitochondrion	33.49	47.36
CDY34275	Canola	cytosol	42.99	44.16
CDY11007	Canola	cytosol	42.68	44.05
CDY08914	Canola	cytosol	42.21	43.64
CDY24832	Canola	cytosol	42.37	43.52
CDX85810	Canola	mitochondrion	45.64	43.09
CDX90397	Canola	mitochondrion	45.48	43.07
CDY49682	Canola	mitochondrion	45.64	43.02
CDY56552	Canola	mitochondrion	45.64	43.02
CDX81132	Canola	mitochondrion	45.64	43.02
CDX75683	Canola	mitochondrion	45.17	42.52
CDX69342	Canola	mitochondrion	45.02	42.5
CDX92631	Canola	plastid	44.55	40.4
CDY03462	Canola	plastid	44.7	40.31
CDY03461	Canola	plastid	42.68	38.54
CDY03459	Canola	cytosol	37.69	36.56
CDY44807	Canola	mitochondrion	44.7	36.33
CDY49667	Canola	nucleus	2.18	18.67

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	GO:A0A078EZG8
EnsemblPlants:CDY06347	ProteinID:CDY06347	ProteinID:CDY06347.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00122279001	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS
InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297
ScanProsite:PS00329	PANTHER:PTHR19375	PANTHER:PTHR19375:SF215	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
UniParc:UPI0004EED8AE	SEG:seg	:	:	:	:

Description

BnaA09g48560D

Coordinates

chrLK031968:-:900097..902795

Molecular Weight (calculated)

71784.4 Da

IEP (calculated)

4.579

GRAVY (calculated)

-0.424

Length

642 amino acids

Sequence
(BLAST)

001: MCLDGLIGSN TQLFFNWLIF DEYMCLWRLM FMNRAVFMSS VAIEGEEEKL GTVIGIDLGT TYSCVGVYHN NHVEIIANDQ GNRITPSWVA FTDTERLIGE
101: AAKNQAAKNP EGTIFDPKRL MGRKFDDPDV QRDIKFLPYK VVNKDGKPYI QVKVKGEVKV FSPEEISAMI LSKMKETAEA FLGKKIKDAV ITVPAYFNDA
201: QRQATKDAGA IAGLNVVRII NEPTGAAIAY GLDKKGGETN ILVYDLGGGT FDVSILTIDN GVFEVLSTSG DTHLGGEDFD HRVMDYFIKL IKKKYNKDIS
301: KDHKALGKLR RECERAKRAL SNQHQVRVEI ESLFDGADFS EPLTKARFEE LNMDFTRIPK VQEMLKDFFD GKEPNKGTNP DEAVAYGAAV QGGVLSGEGG
401: EETQNILLLD VAPLSLGIET VGGVMTKVIP RNTAIPTKKS QVFTTYQDQQ TTVSIKVYEG ERSMTKDNRE LGKFDLTGIL PAPRGVAQIE VTFEVDANGI
501: LQVKAEDKVA KTSQSITITN DKGRLTQEEI DEMIREAEEF AEEDRIVKEK IDAKNKLETY VYNMKSSLEK LAEKISYEDK AKMEEVLKEA LEWLEENVNA
601: EKDDYEEKLK EVESVCNPVI KSVYEKTSGE SEEDEEVGDV EL

Best Arabidopsis Sequence Match ( AT1G09080.1 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.