CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76646
CDX89142
CDY11430
CDY63310

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09080.1	CDX76646	AT3G62600.1	19763086
AT1G09080.1	CDX89142	AT3G62600.1	19763086
AT1G09080.1	CDY11430	AT3G62600.1	19763086
AT1G09080.1	CDY63310	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06347	Canola	endoplasmic reticulum	98.84	93.15
AT1G09080.1	Thale cress	endoplasmic reticulum	92.23	82.67
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	81.49	75.96
CDX77423	Canola	cytosol, endoplasmic reticulum	77.85	73.36
CDX67525	Canola	endoplasmic reticulum	69.92	73.31
CDY63497	Canola	endoplasmic reticulum	77.52	73.05
CDX79726	Canola	endoplasmic reticulum	77.36	72.9
CDY46766	Canola	endoplasmic reticulum	77.19	72.74
CDY23972	Canola	endoplasmic reticulum	77.19	72.74
CDX84809	Canola	endoplasmic reticulum	77.19	72.74
CDY13371	Canola	cytosol, endoplasmic reticulum	80.5	72.36
PGSC0003DMT400063543	Potato	endoplasmic reticulum	79.17	71.6
Solyc01g099660.2.1	Tomato	extracellular	79.17	71.6
Os03t0710500-00	Rice	extracellular, plasma membrane	73.88	66.82
EER93587	Sorghum	endoplasmic reticulum	73.72	65.98
CDY52661	Canola	cytosol	61.16	57.19
CDY50531	Canola	cytosol	61.16	56.92
CDY00784	Canola	cytosol	60.99	56.77
CDX73815	Canola	cytosol	61.16	56.75
CDX83960	Canola	cytosol	59.67	55.54
CDX96825	Canola	cytosol	59.5	55.38
CDY33359	Canola	cytosol	47.27	55.21
CDY35063	Canola	cytosol	46.94	54.83
CDY49668	Canola	cytosol	42.64	51.81
CDY40362	Canola	cytosol, mitochondrion	35.54	47.36
CDY11007	Canola	cytosol	45.62	44.37
CDY34275	Canola	cytosol	45.79	44.32
CDY08914	Canola	cytosol	45.12	43.96
CDY24832	Canola	cytosol	45.29	43.84
CDX90397	Canola	mitochondrion	48.1	42.92
CDY49682	Canola	mitochondrion	48.26	42.88
CDY56552	Canola	mitochondrion	48.26	42.88
CDX81132	Canola	mitochondrion	48.26	42.88
CDX85810	Canola	mitochondrion	48.1	42.79
CDX75683	Canola	mitochondrion	47.93	42.52
CDX69342	Canola	mitochondrion	47.77	42.5
CDX92631	Canola	plastid	47.27	40.4
CDY03462	Canola	plastid	47.27	40.17
CDY03461	Canola	plastid	45.29	38.54
CDY03459	Canola	cytosol	39.83	36.4
CDY44807	Canola	mitochondrion	47.11	36.08
CDY49667	Canola	nucleus	2.15	17.33

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	GO:A0A078GDD4
UniProt:A0A078GDD4	EnsemblPlants:CDY22648	ProteinID:CDY22648	ProteinID:CDY22648.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00019318001	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	PANTHER:PTHR19375	PANTHER:PTHR19375:SF215	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI0004EC2C3E	SEG:seg	:	:	:

Description

BnaC08g42820DBnaC08g42820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDD4]

Coordinates

chrLK032134:+:284297..286832

Molecular Weight (calculated)

67352.7 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.516

Length

605 amino acids

Sequence
(BLAST)

001: MSSVAIEGEE EKLGTVIGID LGTTYSCVGV YHNNHVEIIA NDQGNRITPS WVAFTDTERL IGEAAKNQAA KNPEGTIFDP KRLMGRKFDD PDVQRDIKFL
101: PYKVVNKDGK PYIQVKVKGE VKVFSPEEIS AMILTKMKET AEAFLGKKIK DAVITVPAYF NDAQRQATKD AGAIAGLNVV RIINEPTGAA IAYGLDKKGG
201: ETNILVYDLG GGTFDVSILT IDNGVFEVLS TSGDTHLGGE DFDHRVMDYF IKLIKKKYNK DISKDHKALG KLRRECERAK RALSNQHQVR VEIESLFDGA
301: DFSEPLTKAR FEELNMDFTR IPKVQEMLKD FFDGKEPNKG TNPDEAVAYG AAVQGGVLSG EGGEETQNIL LLDVAPLSLG IETVGGVMTK VIPRNTAIPT
401: KKSQVFTTYQ DQQTTVSIKV YEGERSMTKD NRELGKFDLT GILPAPRGVA QIEVTFEVDA NGILHVKAED KVAKTSQTIT ITNDKGRLTQ EEIDEMIREA
501: EEFAEEDRIV KEKIDAKNKL ETYVYNMKSS LEKLAEKISE EEKEKMEEVL KEALEWLEEN VNAEKDDYEE KLKEVESVCN PVIKSVYEKT SGESEEDEEV
601: GDDEL

Best Arabidopsis Sequence Match ( AT1G09080.1 )
(BLAST)

001: MIFIKENTAK MTRNKAIACL VFLTVLDFLM NIGAALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA
101: AKNQAAKNPE RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ
201: RQATKDAGAI AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK
301: DHKALGKLRR ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD
401: GKEPSKGTNP DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE
501: LGKFDLTGIL PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD
601: KEKLAKKISD EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL

Arabidopsis Description

MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.