CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
EES17752
KXG32445

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09080.1	EES17752	AT3G62600.1	19763086
AT1G09080.1	KXG32445	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0710500-00	Rice	extracellular, plasma membrane	86.98	87.89
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	73.08	76.12
CDY22648	Canola	cytosol	65.98	73.72
Solyc01g099660.2.1	Tomato	extracellular	70.41	71.15
AT1G09080.1	Thale cress	endoplasmic reticulum	71.01	71.11
PGSC0003DMT400063543	Potato	endoplasmic reticulum	70.12	70.85
Bra031657.1-P	Field mustard	endoplasmic reticulum	70.27	70.58
KXG29291	Sorghum	plasma membrane	70.41	70.21
CDY06347	Canola	endoplasmic reticulum	66.57	70.09
EES01866	Sorghum	endoplasmic reticulum	67.6	68.52
EER92466	Sorghum	cytosol	57.84	59.97
EES01731	Sorghum	cytosol	57.4	59.88
KXG26133	Sorghum	cytosol	54.44	59.74
EES19649	Sorghum	cytosol	57.1	59.48
EER95095	Sorghum	cytosol	56.51	58.86
EES16191	Sorghum	cytosol	56.21	58.55
KXG39675	Sorghum	cytosol	44.82	56.42
EER95091	Sorghum	cytosol	46.15	55.12
EER95094	Sorghum	cytosol	45.41	55.02
KXG39678	Sorghum	cytosol	45.12	54.86
OQU92816	Sorghum	cytosol	34.91	54.38
EER92471	Sorghum	cytosol	46.01	54.37
KXG39677	Sorghum	cytosol	42.75	52.55
OQU92815	Sorghum	cytosol	29.44	52.23
EER95090	Sorghum	cytosol	43.93	52.01
EER91365	Sorghum	mitochondrion	45.12	44.99
KXG37805	Sorghum	plastid	44.38	43.99
EER99104	Sorghum	mitochondrion	43.64	43.51
EES15917	Sorghum	plastid	43.34	41.74

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	EntrezGene:8062914
UniProt:C5WN47	ncoils:Coil	EnsemblPlants:EER93587	ProteinID:EER93587	ProteinID:EER93587.1	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016592	GO:GO:0030154
GO:GO:0040007	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF215	EnsemblPlantsGene:SORBI_3001G118600	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A828A7	RefSeq:XP_002466589.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:9239221..9241712

Molecular Weight (calculated)

74483.7 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.447

Length

676 amino acids

Sequence
(BLAST)

001: MRTTKPTILA LVLLSLLCSG YLTGLADGAE ARKGKKASGP GPGPVIGIDL GTTYSCVGVY RNGHVDIVAN DQGNRITPSW VAFTDEERLV GEAAKNQAPL
101: NPQRTIFDIK RLIGRRFDDE EVQRDVRYLP YKVVNKGGKP YVEVPMKGGE RKTFSPEEIS AMILSKMRET AESYLGHRVA DAVVTVPAYF NDAQRQATKD
201: AGTIAGLNVP RIINEPTAAA IAYGLDKKGA EMMNVLVYDL GGGTFDVSVL SLDHGVFEVL ATSGDTHLGG EDFDQRVMDH FIRLVKRKHG KDISKDGRAM
301: GKLRRECERA KRALSSQHQV RVEIESLFDG VDFSEQLTRA KFEELNMDLF KKTLGPVKKA IADAKLKKSD IHEIVLVGGS TRIPKVQELL TEMFDGKEPT
401: KGINPDEAVA YGAAIQASII SGEGGAETKD ILLLDVTPLT LGIETAGGVM TKLIPRNTRI PVKKSQVFTT YEDHQTTVSI KVFEGERSLT KDCRELGRFD
501: LTGIPPAPRG VPQIEVTFEV DENGILHVTA ADKAGGRSKS ITITNDKGRL SQEEIDRMVR EAEEFAEEDR RVRERVDARN RLENYVYRVR ATVRDAGGMA
601: RKIGDEDRER MEAALAEALE WLEEQDGAAG RTAEKEEYEE KLREVEEVCG PIIKQVYEKS AGSDAAADEE DDVNEL

Best Arabidopsis Sequence Match ( AT5G28540.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL

Arabidopsis Description

MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.