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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • plastid 1
  • endoplasmic reticulum 6
  • extracellular 4
  • vacuole 4
  • plasma membrane 4
  • golgi 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
EER93587
EES13770
EES15057
EES17752
KXG29291
KXG32445

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62600.1 EER93587 AT1G09080.1 19763086
AT3G62600.1 EES13770 AT2G25110.1 19763086
AT3G62600.1 EES15057 AT2G25110.1 19763086
AT3G62600.1 EES17752 AT3G62600.1 19763086
AT3G62600.1 KXG32445 AT3G62600.1 19763086
AT3G62600.1 KXG29291 AT5G28540.1 19763086
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d009783_P004 Maize mitochondrion 96.57 96.57
Os05t0156500-01 Rice cytosol, nucleus 37.71 90.41
TraesCS1A01G099300.1 Wheat nucleus 90.29 90.29
TraesCS1B01G125100.1 Wheat nucleus 90.29 90.29
TraesCS1D01G107200.1 Wheat nucleus 90.0 90.0
Zm00001d037586_P001 Maize endoplasmic reticulum 94.0 89.65
GSMUA_Achr8P33890_001 Banana endoplasmic reticulum 79.14 80.52
VIT_07s0005g01220.t01 Wine grape endoplasmic reticulum, golgi, vacuole 78.29 79.42
KRG96505 Soybean nucleus 76.86 78.43
PGSC0003DMT400023249 Potato endoplasmic reticulum, golgi 77.14 78.26
KRH68242 Soybean endoplasmic reticulum 76.57 78.13
Solyc01g079610.2.1 Tomato nucleus 76.57 77.68
KRH69236 Soybean endoplasmic reticulum 74.86 75.72
AT3G62600.1 Thale cress endoplasmic reticulum, golgi 74.29 75.14
CDY63310 Canola endoplasmic reticulum 74.0 74.64
CDX89142 Canola endoplasmic reticulum 74.0 74.64
Bra007687.1-P Field mustard golgi 73.71 74.57
CDX76646 Canola golgi 73.71 74.57
CDY11430 Canola golgi 73.71 74.57
CDY59898 Canola endoplasmic reticulum, golgi 73.14 73.78
KXG32445 Sorghum endoplasmic reticulum 72.0 72.83
CDX67894 Canola endoplasmic reticulum, golgi 68.0 72.78
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum, vacuole 76.86 72.12
HORVU1Hr1G022990.1 Barley cytosol 86.0 70.82
KRH55068 Soybean cytosol 26.57 67.88
Bra003501.1-P Field mustard nucleus 69.43 65.5
Bra014400.1-P Field mustard golgi 72.86 38.17
EES17644 Sorghum cytosol 31.71 35.46
EES19943 Sorghum cytosol 35.43 34.25
EES02163 Sorghum cytosol 32.86 34.12
EES14600 Sorghum cytosol 32.29 32.94
EER93745 Sorghum nucleus 39.43 32.94
KXG37403 Sorghum cytosol 38.86 32.54
OQU82085 Sorghum nucleus 36.57 30.62
EES13688 Sorghum cytosol 30.86 30.42
KXG29372 Sorghum cytosol 28.57 29.59
EES07516 Sorghum nucleus 34.86 29.05
EES01846 Sorghum cytosol 22.86 24.32
EES15725 Sorghum mitochondrion, plastid 26.86 22.43
EER89093 Sorghum mitochondrion, plastid 27.43 22.07
EES19566 Sorghum cytosol 21.43 22.06
EES13204 Sorghum plastid 28.0 21.88
KXG31305 Sorghum plastid 28.86 20.32
KXG19604 Sorghum mitochondrion 25.14 18.92
OQU92981 Sorghum plastid 24.86 16.14
Protein Annotations
Gene3D:1.10.287.110MapMan:19.1.1.2.1.2Gene3D:2.60.260.20EntrezGene:8070101UniProt:C5Z0K5ncoils:Coil
InterPro:DnaJ_CInterPro:DnaJ_domainInterPro:DnaJ_domain_CSEnsemblPlants:EES17752ProteinID:EES17752ProteinID:EES17752.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0006457GO:GO:0008150GO:GO:0009987
GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdInterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfPFAM:PF00226
PFAM:PF01556PRINTS:PR00625ScanProsite:PS00636PFscan:PS50076PANTHER:PTHR43888PANTHER:PTHR43888:SF14
SMART:SM00271EnsemblPlantsGene:SORBI_3009G051700SUPFAM:SSF46565SUPFAM:SSF49493unigene:Sbi.15388SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0001A887E1RefSeq:XP_002439322.1SEG:seg::
Description
hypothetical protein
Coordinates
chr9:+:5243237..5247677
Molecular Weight (calculated)
39297.0 Da
IEP (calculated)
7.118
GRAVY (calculated)
-0.588
Length
350 amino acids
Sequence
(BLAST)
001: MAAPGKGGAA RFAAVFFVLL NLAVAIAGKS YYDVLQVPKG ASEDQIKRSY RKLALKYHPD KNPDNEEANK RFAEINNAYE VLTDQEKRKI YDRYGEEGLK
101: QFQGGRGGGG GMNIQDIFSS FFGGGGGGME EEEEQIVKGD EVIVELDASL EDLYMGGSLK VWREKNVIKP APGKRRCNCR NEVYHRQIGP GMYQQMTEQV
201: CDQCPNVKFV REGEFLTVDI EKGMKDGQEV LFFEEGEPKI DGEPGDLKFR IRTAPHSRFR REGNDLHATV TISLVQALVG FEKTIKHLDN HLVEIGTKGI
301: TKPKEIRKFK GEGMPLYQSN KKGDLYVTFE VLFPKTLTDD QKAKLKDVLV
Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)
001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA
Arabidopsis Description
ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.