Factsheet for TraesCS1D01G107200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	nucleus

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G099300.1
TraesCS1B01G125100.1
TraesCS1D01G107200.1
TraesCS6A01G042600.1
TraesCS6B01G058300.1
TraesCS6D01G049100.1
TraesCS7A01G159300.1
TraesCS7A01G330300.1
TraesCS7B01G063900.1
TraesCS7B01G231000.1
TraesCS7D01G160300.1
TraesCS7D01G327100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62600.1	TraesCS7A01G159300.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS7A01G330300.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS7B01G063900.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS7B01G231000.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS7D01G160300.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS7D01G327100.1	AT2G25110.1	19763086
AT3G62600.1	TraesCS1A01G099300.1	AT3G62600.1	19763086
AT3G62600.1	TraesCS1B01G125100.1	AT3G62600.1	19763086
AT3G62600.1	TraesCS1D01G107200.1	AT3G62600.1	19763086
AT3G62600.1	TraesCS6A01G042600.1	AT5G28540.1	19763086
AT3G62600.1	TraesCS6B01G058300.1	AT5G28540.1	19763086
AT3G62600.1	TraesCS6D01G049100.1	AT5G28540.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G125100.1	Wheat	nucleus	99.43	99.43
TraesCS1A01G099300.1	Wheat	nucleus	99.14	99.14
EES17752	Sorghum	endoplasmic reticulum, golgi	90.0	90.0
Os05t0156500-01	Rice	cytosol, nucleus	37.43	89.73
Zm00001d009783_P004	Maize	mitochondrion	88.29	88.29
Zm00001d037586_P001	Maize	endoplasmic reticulum	86.86	82.83
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	78.0	79.13
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	77.14	78.49
Solyc01g079610.2.1	Tomato	nucleus	76.57	77.68
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	76.29	77.39
AT3G62600.1	Thale cress	endoplasmic reticulum, golgi	75.71	76.59
HORVU1Hr1G022990.1	Barley	cytosol	92.86	76.47
KRG96505	Soybean	nucleus	74.57	76.09
KRH68242	Soybean	endoplasmic reticulum	74.57	76.09
CDX89142	Canola	endoplasmic reticulum	75.14	75.79
CDY63310	Canola	endoplasmic reticulum	75.14	75.79
CDY11430	Canola	golgi	74.29	75.14
CDX76646	Canola	golgi	74.29	75.14
Bra007687.1-P	Field mustard	golgi	74.29	75.14
CDY59898	Canola	endoplasmic reticulum, golgi	74.29	74.93
KRH69236	Soybean	endoplasmic reticulum	74.0	74.86
CDX67894	Canola	endoplasmic reticulum, golgi	68.86	73.7
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	76.57	71.85
KRH55068	Soybean	cytosol	26.0	66.42
Bra003501.1-P	Field mustard	nucleus	70.0	66.04
Bra014400.1-P	Field mustard	golgi	74.29	38.92
TraesCS3D01G168500.1	Wheat	cytosol	34.29	34.78
TraesCS5D01G382400.1	Wheat	plastid	40.0	33.25
TraesCS1D01G072800.1	Wheat	nucleus	32.57	33.14
TraesCS1D01G403500.1	Wheat	cytosol	34.0	32.96
TraesCS7D01G293900.1	Wheat	cytosol	32.0	32.37
TraesCS5D01G434100.1	Wheat	nucleus	38.86	32.3
TraesCS6D01G232600.1	Wheat	nucleus	36.29	29.88
TraesCS7D01G045900.2	Wheat	mitochondrion	27.71	24.31
TraesCS3D01G379400.1	Wheat	cytosol	21.43	23.08
TraesCS5D01G129700.1	Wheat	mitochondrion, plastid	27.71	23.04
TraesCS1D01G267500.1	Wheat	cytosol	20.0	21.15
TraesCS6D01G356800.1	Wheat	plastid	28.0	20.16
TraesCS5D01G125500.1	Wheat	nucleus	28.29	18.4
TraesCS4D01G241300.2	Wheat	plastid	26.57	17.22
TraesCS7D01G177900.1	Wheat	mitochondrion	23.43	17.12

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.1.2.1.2	Gene3D:2.60.260.20	ncoils:Coil	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR43888
PANTHER:PTHR43888:SF14	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS1D01G107200	EnsemblPlants:TraesCS1D01G107200.1	TIGR:cd06257	TIGR:cd10747	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:100118396..100123264

Molecular Weight (calculated)

39390.0 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.667

Length

350 amino acids

Sequence
(BLAST)

001: MAAPRRSGAR LAAFLALLLH LAAVIEGKSF YDVLQVPKGA SEDQIKRSYR KLALKYHPDK NPDNEEATKR FAEINNAYEV LTDQEKRKIY DRYGEEGLKQ
101: FQGGRGGGGG GMNMQDIFSS FFGGGGGGME EEEEQIIKGD DVIVELDASL EDLYMGGSLK VWREKNIIKP APGKRRCNCR NEVYHRQIGP GMYQQMTEQV
201: CDQCPNVKYV REGDFLTVDI EKGMQDGQEV SFFEEGEPKI DGEPGDLKFR IRTAPHDRFR REGNDLHATV TISLLQALVG FEKNLKHLDN HLVQIGSQGV
301: TKPKEVRKFK GEGMPLHQSN KKGDLYVTFE VLFPKTLTDD QKAKLKEVLA

Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)

001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA

Arabidopsis Description

ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.