Factsheet for TraesCS7D01G327100.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 5
extracellular 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G099300.1
TraesCS1B01G125100.1
TraesCS1D01G107200.1
TraesCS7A01G159300.1
TraesCS7A01G330300.1
TraesCS7B01G063900.1
TraesCS7B01G231000.1
TraesCS7D01G160300.1
TraesCS7D01G327100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	TraesCS7A01G159300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7A01G330300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7B01G063900.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7B01G231000.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7D01G160300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7D01G327100.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS1A01G099300.1	AT3G62600.1	19763086
AT2G25110.1	TraesCS1B01G125100.1	AT3G62600.1	19763086
AT2G25110.1	TraesCS1D01G107200.1	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	98.62	98.62
Os08t0278900-01	Rice	endoplasmic reticulum	89.4	89.4
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	87.1	87.1
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	71.43	81.58
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	75.12	75.46
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	74.65	75.0
KRH61684	Soybean	endoplasmic reticulum	76.5	74.77
KRH52351	Soybean	endoplasmic reticulum	74.65	74.31
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	72.35	73.36
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	71.43	73.11
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	68.66	68.35
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	68.66	68.35
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	67.74	67.43
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	67.28	66.97
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.74	66.82
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.74	66.52
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	66.82	66.21
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.9	66.2
HORVU7Hr1G079030.2	Barley	plastid	65.9	55.43
GSMUA_Achr3P00940_001	Banana	cytosol	18.43	50.63
GSMUA_Achr6P04030_001	Banana	cytosol	27.19	50.43
Solyc03g117020.2.1	Tomato	nucleus	70.97	41.73

Protein Annotations

EnsemblPlants:TraesCS7D01G327100.1	EnsemblPlantsGene:TraesCS7D01G327100	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020	InterPro:GlyclTrfase_39-like
InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46	PFAM:PF02815
PFscan:PS50919	SEG:seg	SignalP:SignalP-noTM	SMART:SM00472	SUPFAM:SSF82109	MapMan:19.1.1.2.1.3

Description

No Description!

Coordinates

chr7D:-:417773790..417780188

Molecular Weight (calculated)

23894.9 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.487

Length

217 amino acids

Sequence
(BLAST)

001: MAAASFALAL VLYLGLDLPE ASPSQSYAAD SDSAVEISYG SVVKLMHERT KFRLHSHDVP YGSGSGQQSV TSFPNVDDAN SYWIVRPQPD TSAKQGHAIT
101: PGTIVRLQHM RTRKWLHSHL HASPITGNLE VSCFGGEGES DTGDYWMLEI EGGGKTWRQN QRIRLRHVDT GGYLHSHDRK YTRIAGGQQE VCGVGDKRPD
201: NVWLAAEGVY FPVSQAK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.