Factsheet for Os08t0278900-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 8
vacuole 6
plasma membrane 6
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 23849113

gfp PMID: 23849113 doi

CJ Park, R Sharma, B Lefebvre, PE Canlas, PC Ronald

Department of Plant Pathology and The Genome Center, University of California Davis, Davis, CA, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0156500-01
Os08t0278900-01
Os08t0440500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	Os08t0278900-01	AT2G25110.1	19763086
AT2G25110.1	Os08t0440500-01	AT2G25110.1	19763086
AT2G25110.1	Os05t0156500-01	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	90.32	90.32
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	90.32	90.32
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	89.4	89.4
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	76.96	77.31
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	66.36	75.79
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	74.65	75.0
KRH52351	Soybean	endoplasmic reticulum	74.65	74.31
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	73.27	74.3
KRH61684	Soybean	endoplasmic reticulum	75.58	73.87
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	71.43	73.11
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	70.05	69.72
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	70.05	69.72
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	69.59	69.59
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	69.59	69.27
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	68.2	67.89
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.2	67.27
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.74	66.52
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	66.82	66.21
GSMUA_Achr6P04030_001	Banana	cytosol	28.11	52.14
HORVU7Hr1G079030.2	Barley	plastid	60.83	51.16
GSMUA_Achr3P00940_001	Banana	cytosol	17.97	49.37
Solyc03g117020.2.1	Tomato	nucleus	70.97	41.73

Protein Annotations

MapMan:19.1.1.2.1.3	Gene3D:2.80.10.50	EntrezGene:4345160	ProteinID:BAC99520.1	ProteinID:BAC99752.1	ProteinID:BAF23353.1
ProteinID:BAT04690.1	ProteinID:EEE68387.1	GO:GO:0000030	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464
GO:GO:0006486	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742
GO:GO:0050832	GO:GO:0052033	GO:GO:0097502	InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf
InterPro:MIR_motif	EnsemblPlantsGene:Os08g0278900	EnsemblPlants:Os08t0278900-01	PFAM:PF02815	PFscan:PS50919	PANTHER:PTHR10050
UniProt:Q6Z1L1	SMART:SM00472	SUPFAM:SSF82109	SignalP:SignalP-noTM	UniParc:UPI00001D8D37	RefSeq:XP_015648515.1
SEG:seg	:	:	:	:	:

Description

MIR domain containing protein. (Os08t0278900-01)

Coordinates

chr8:-:10810395..10813333

Molecular Weight (calculated)

24142.2 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.610

Length

217 amino acids

Sequence
(BLAST)

001: MAAASFAIAL LLYLGLDLPE ASPAQSYAAD PDNVVEITYG SAIKLMHERT KFRLHSHDVP YGSGSGQQSV TSFPNVDDSN SYWIVRPQPD TSAKQGDPIT
101: HGTVVRLQHM RTRKWLHSHM HASPITGNLE VSCFGGENES DTGDYWRLEI EGSGKSWRQN QKIRLRHVDT GGYLHSHDRK YTRIAGGQQE VCGVGDKRPD
201: NVWLAAEGVY LPVNQQK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.