Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007687.1-P | |
| Bra007818.1-P | |
| Bra014400.1-P | |
| Bra032038.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25110.1 | Bra007818.1-P | AT2G25110.1 | 19763086 |
| AT2G25110.1 | Bra032038.1-P | AT2G25110.1 | 19763086 |
| AT2G25110.1 | Bra007687.1-P | AT3G62600.1 | 19763086 |
| AT2G25110.1 | Bra014400.1-P | AT3G62600.1 | 19763086 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56283 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 100.0 | 99.09 |
| AT2G25110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 90.87 | 91.28 |
| Bra032038.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 89.95 | 90.37 |
| KRH52351 | Soybean | endoplasmic reticulum | 78.54 | 78.9 |
| KRH61684 | Soybean | endoplasmic reticulum | 79.0 | 77.93 |
| VIT_04s0008g05820.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 75.8 | 76.85 |
| PGSC0003DMT400036615 | Potato | endoplasmic reticulum, extracellular, golgi | 73.97 | 76.42 |
| GSMUA_Achr3P13410_001 | Banana | endoplasmic reticulum, golgi, vacuole | 69.86 | 70.83 |
| GSMUA_Achr6P04010_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 68.49 | 70.09 |
| EES13770 | Sorghum | endoplasmic reticulum, golgi, vacuole | 66.67 | 67.28 |
| Os08t0440500-01 | Rice | endoplasmic reticulum, golgi, vacuole | 66.67 | 67.28 |
| Os08t0278900-01 | Rice | endoplasmic reticulum | 66.21 | 66.82 |
| TraesCS7D01G327100.1 | Wheat | endoplasmic reticulum | 66.21 | 66.82 |
| TraesCS7A01G330300.1 | Wheat | endoplasmic reticulum | 66.21 | 66.82 |
| TraesCS7D01G160300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 65.3 | 66.2 |
| TraesCS7B01G063900.1 | Wheat | golgi | 64.84 | 65.74 |
| EES15057 | Sorghum | endoplasmic reticulum | 63.93 | 64.81 |
| Zm00001d032157_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 63.93 | 64.81 |
| Zm00001d050430_P003 | Maize | extracellular | 63.47 | 64.35 |
| TraesCS7A01G159300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.38 | 63.8 |
| TraesCS7B01G231000.1 | Wheat | endoplasmic reticulum | 47.95 | 55.26 |
| GSMUA_Achr6P04030_001 | Banana | cytosol | 27.85 | 52.14 |
| GSMUA_Achr3P00940_001 | Banana | cytosol | 16.44 | 45.57 |
| Solyc03g117020.2.1 | Tomato | nucleus | 73.06 | 43.36 |
| HORVU7Hr1G079030.2 | Barley | plastid | 42.92 | 36.43 |
Protein Annotations
| EnsemblPlants:Bra007818.1 | EnsemblPlants:Bra007818.1-P | EnsemblPlantsGene:Bra007818 | Gene3D:2.80.10.50 | GO:GO:0005575 | GO:GO:0016020 |
| InterPro:GlyclTrfase_39-like | InterPro:IPR016093 | InterPro:MIR_dom_sf | InterPro:MIR_motif | PANTHER:PTHR10050 | PANTHER:PTHR10050:SF46 |
| PFAM:PF02815 | PFscan:PS50919 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00472 | SUPFAM:SSF82109 |
| UniParc:UPI0002542D04 | UniProt:M4CUC4 | MapMan:19.1.1.2.1.3 | : | : | : |
Description
AT2G25110 (E=3e-106) SDF2 | SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)
Coordinates
chrA09:-:31041950..31043546
Molecular Weight (calculated)
23842.9 Da
IEP (calculated)
7.804
GRAVY (calculated)
-0.451
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFSLALFL FLSVDSDSGY TSASAAAASG KEGVEITYGS AMKLMHEKTK VRLHSHDVPY GSGSGQQSVT GFPGVVDSNS YWIVKPVPGT TAKQGDAVMS
101: GATIRLQHMK TRKWLHSHLH ASPISGNLEV SCFGDDSNSD TGDHWKLIIE GSGKTWKQDQ RVRLQHIDTS GYLHSHDKKY QRIAGGQQEV CGIREKRADN
201: VWLAAEGVYL PVDESSSSK
101: GATIRLQHMK TRKWLHSHLH ASPISGNLEV SCFGDDSNSD TGDHWKLIIE GSGKTWKQDQ RVRLQHIDTS GYLHSHDKKY QRIAGGQQEV CGIREKRADN
201: VWLAAEGVYL PVDESSSSK
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
Arabidopsis Description
SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.