Factsheet for TraesCS7B01G063900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G099300.1
TraesCS1B01G125100.1
TraesCS1D01G107200.1
TraesCS7A01G159300.1
TraesCS7A01G330300.1
TraesCS7B01G063900.1
TraesCS7B01G231000.1
TraesCS7D01G160300.1
TraesCS7D01G327100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	TraesCS7A01G159300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7A01G330300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7B01G063900.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7B01G231000.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7D01G160300.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS7D01G327100.1	AT2G25110.1	19763086
AT2G25110.1	TraesCS1A01G099300.1	AT3G62600.1	19763086
AT2G25110.1	TraesCS1B01G125100.1	AT3G62600.1	19763086
AT2G25110.1	TraesCS1D01G107200.1	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	99.54	99.54
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	99.07	96.83
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	86.11	85.71
Zm00001d050430_P003	Maize	extracellular	83.33	83.33
EES15057	Sorghum	endoplasmic reticulum	82.87	82.87
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	80.56	80.56
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	72.22	72.9
KRH52351	Soybean	endoplasmic reticulum	68.98	68.35
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	68.06	68.06
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	67.13	67.76
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	66.2	67.45
KRH61684	Soybean	endoplasmic reticulum	68.98	67.12
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	66.67	65.16
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	65.74	64.84
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	65.28	64.68
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	65.28	64.68
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	65.28	64.68
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.74	64.55
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	64.81	64.22
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	48.15	54.74
Solyc03g117020.2.1	Tomato	nucleus	66.2	38.75

Protein Annotations

EnsemblPlants:TraesCS7B01G063900.1	EnsemblPlantsGene:TraesCS7B01G063900	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020	InterPro:GlyclTrfase_39-like
InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46	PFAM:PF02815
PFscan:PS50919	SEG:seg	SignalP:SignalP-noTM	SMART:SM00472	SUPFAM:SSF82109	MapMan:19.1.1.2.1.3

Description

No Description!

Coordinates

chr7B:+:69658689..69663173

Molecular Weight (calculated)

23678.7 Da

IEP (calculated)

7.806

GRAVY (calculated)

-0.538

Length

216 amino acids

Sequence
(BLAST)

001: MAASVLALAV ALLLGASSRV DHGAAAAPVS EEGLQVTYGS TVKLMHEKTK VRLHSHDVAY GSGSGQQSVT GFPEIDDSNS YWIVRPTLDS SAKQGDAVET
101: GSIIRLQHMR TRRWLHSHLH ASPLSGNLEV SCFGGDGQSD TGDYWRLEIE GKDKVWKRDQ KVRLRHVDTG GYLHSHNKKY NRLGGGQQEV CGVRDKRAEN
201: IWSTAEGVYL PVDESK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.