Factsheet for GSMUA_Achr6P04010_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	extracellular, nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P00940_001
GSMUA_Achr3P13410_001
GSMUA_Achr6P04010_001
GSMUA_Achr6P04030_001
GSMUA_Achr8P33890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	GSMUA_Achr3P00940_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr3P13410_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04010_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04030_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr11P...	AT3G62600.1	19763086
AT2G25110.1	GSMUA_Achr8P33890_001	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	78.04	77.31
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	76.64	76.64
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	76.64	75.58
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	75.23	74.54
Zm00001d050430_P003	Maize	extracellular	74.3	73.61
EES15057	Sorghum	endoplasmic reticulum	74.3	73.61
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	72.9	73.58
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	73.83	73.15
TraesCS7B01G063900.1	Wheat	golgi	72.9	72.22
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	72.43	71.76
KRH61684	Soybean	endoplasmic reticulum	73.83	71.17
KRH52351	Soybean	endoplasmic reticulum	72.43	71.1
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	71.96	70.64
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	71.96	70.64
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	71.96	70.64
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	72.9	70.59
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	70.56	69.27
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.03	69.09
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.03	68.78
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	70.09	68.49
GSMUA_Achr6P04030_001	Banana	cytosol	31.31	57.27
GSMUA_Achr3P00940_001	Banana	cytosol	18.22	49.37
Solyc03g117020.2.1	Tomato	nucleus	73.36	42.55

Protein Annotations

EnsemblPlants:GSMUA_Achr6P04010_001	EnsemblPlants:GSMUA_Achr6T04010_001	EnsemblPlantsGene:GSMUA_Achr6G04010_001	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020
InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PFAM:PF02815
PFscan:PS50919	SEG:seg	SignalP:SignalP-noTM	SMART:SM00472	SUPFAM:SSF82109	UniParc:UPI0002958EBB
UniProt:M0T3Z9	MapMan:19.1.1.2.1.3	:	:	:	:

Description

Stromal cell-derived factor 2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G04010_001]

Coordinates

chr6:-:2762750..2768355

Molecular Weight (calculated)

23723.0 Da

IEP (calculated)

7.782

GRAVY (calculated)

-0.438

Length

214 amino acids

Sequence
(BLAST)

001: MALSVLFALS ALLLLGLDEV SVRPASAAAD VVEITYGSVI KLMHEKTKYR LHSHDVPYGS GSGQQSVTGS PDVDDSNSYW IVRPQPDSSA RQGDIIETGA
101: IIRLQHMKTR RWLHSHLHAS PLSGNLEVSC YGGDDRSDTG DFWRLEIEGS GKTWRKDQRV RLRHVDTSGY LHSHDKKYNR IAGGQQEVCG VRDKRADNVW
201: LAAEGVYLPV IASK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.