Factsheet for VIT_09s0070g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	extracellular, nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	79.91	79.17
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	77.57	78.3
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	78.97	78.24
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	76.64	76.64
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	74.77	73.73
Os08t0278900-01	Rice	endoplasmic reticulum	74.3	73.27
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	73.83	72.81
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	73.36	72.35
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	71.5	70.51
EES15057	Sorghum	endoplasmic reticulum	68.22	67.59
Zm00001d050430_P003	Maize	extracellular	68.22	67.59
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.22	67.59
TraesCS7B01G063900.1	Wheat	golgi	67.76	67.13
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	67.76	67.13
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.22	66.06
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	53.27	60.0
GSMUA_Achr6P04030_001	Banana	cytosol	28.97	52.99
GSMUA_Achr3P00940_001	Banana	cytosol	18.22	49.37
Solyc03g117020.2.1	Tomato	nucleus	78.04	45.26
HORVU7Hr1G079030.2	Barley	plastid	47.66	39.53

Protein Annotations

EntrezGene:100260264	wikigene:100260264	MapMan:19.1.1.2.1.3	Gene3D:2.80.10.50	ProteinID:CBI38927	ProteinID:CBI38927.3
UniProt:D7U863	EMBL:FN596740	GO:GO:0000030	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0019538	GO:GO:0097502	InterPro:GlyclTrfase_39-like
InterPro:IPR016093	EntrezGene:LOC100260264	wikigene:LOC100260264	InterPro:MIR_dom_sf	InterPro:MIR_motif	PFAM:PF02815
PFscan:PS50919	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46	SMART:SM00472	SUPFAM:SSF82109	SignalP:SignalP-noTM
TIGR:TC66439	UniParc:UPI00015CB963	ArrayExpress:VIT_09s0070g00030	EnsemblPlantsGene:VIT_09s0070g00030	EnsemblPlants:VIT_09s0070g00030.t01	unigene:Vvi.5810
RefSeq:XP_002271807	RefSeq:XP_002271807.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:12929682..12939947

Molecular Weight (calculated)

23860.0 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.478

Length

214 amino acids

Sequence
(BLAST)

001: MALAFFGLSI FLLLTLDLDQ SSPSPVYAAS QGVEITYGST IKLMHERTRF RLHSHDVPYG SGSGQQSVTA FPNVDDSNSY WIVRPLLGSS SKQGDSIKSG
101: TIIRLQHMRT RKWLHSHLHA SPISGNLEVS CYGEDDNSDT GDNWRLEIEG SGKTWKQDQR VRLLHVDTGG YLHSHDKKYT RIAGGQQEVC GVRDKRADNV
201: WLAVEGVYLP VNES

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.