Factsheet for Zm00001d050430_P003

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009210_P001
Zm00001d009783_P004
Zm00001d032157_P001
Zm00001d037586_P001
Zm00001d050430_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	Zm00001d032157_P001	AT2G25110.1	19763086
AT2G25110.1	Zm00001d050430_P003	AT2G25110.1	19763086
AT2G25110.1	Zm00001d009210_P001	AT3G62600.1	19763086
AT2G25110.1	Zm00001d009783_P004	AT3G62600.1	19763086
AT2G25110.1	Zm00001d037586_P001	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15057	Sorghum	endoplasmic reticulum	94.44	94.44
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	92.59	92.59
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	85.65	85.25
TraesCS7B01G063900.1	Wheat	golgi	83.33	83.33
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	82.87	82.87
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	83.33	81.45
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	73.61	74.3
KRH52351	Soybean	endoplasmic reticulum	68.98	68.35
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	67.59	68.22
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	68.06	68.06
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	65.74	66.98
KRH61684	Soybean	endoplasmic reticulum	68.52	66.67
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	66.67	66.06
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	66.67	66.06
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	66.67	66.06
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	65.74	65.14
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.74	64.55
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	65.28	63.8
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	64.35	63.47
Solyc03g117020.2.1	Tomato	nucleus	65.74	38.48

Protein Annotations

EntrezGene:100284622	MapMan:19.1.1.2.1.3	Gene3D:2.80.10.50	ProteinID:AQK52512.1	ProteinID:AQK52514.1	UniProt:B6TVP8
EMBL:EU969063	GO:GO:0005575	GO:GO:0016020	InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf
InterPro:MIR_motif	PFAM:PF02815	PFscan:PS50919	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46	SMART:SM00472
SUPFAM:SSF82109	SignalP:SignalP-noTM	UniParc:UPI000182E634	EnsemblPlantsGene:Zm00001d050430	EnsemblPlants:Zm00001d050430_P003	EnsemblPlants:Zm00001d050430_T003
SEG:seg	:	:	:	:	:

Description

Stromal cell-derived factor 2

Coordinates

chr4:+:87428125..87436080

Molecular Weight (calculated)

23421.5 Da

IEP (calculated)

7.441

GRAVY (calculated)

-0.512

Length

216 amino acids

Sequence
(BLAST)

001: MAASLLVLAV AFLVGSGSGG IDGGAAAPVE VEGTEVAYGS VIKLMHEKTK HRLHSHDVPY GSGSGQQSVT GFPEGDDSNS YWIIRPTPDS SSKQGDAIET
101: GGIIRLQHMR TRRWLHSHLH ASPLSGNLEV SCFGGDELSD SGDHWRLEIE GSGKVWKRDQ KVRLRHVDTG GYLHSHNKKY NRLGGGQQEV CGVREKRAEN
201: IWLTAEGVYL PVNGSK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.