Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- plastid 1
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032038.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 94.04 | 94.04 |
| CDY35374 | Canola | endoplasmic reticulum, extracellular, golgi | 94.04 | 94.04 |
| CDY55710 | Canola | endoplasmic reticulum, extracellular, golgi | 93.58 | 93.58 |
| CDX76770 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 92.66 | 91.82 |
| CDY56283 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 92.2 | 90.95 |
| Bra007818.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 91.28 | 90.87 |
| KRH61684 | Soybean | endoplasmic reticulum | 79.82 | 78.38 |
| KRH52351 | Soybean | endoplasmic reticulum | 77.52 | 77.52 |
| PGSC0003DMT400036615 | Potato | endoplasmic reticulum, extracellular, golgi | 74.31 | 76.42 |
| VIT_04s0008g05820.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 75.69 | 76.39 |
| GSMUA_Achr3P13410_001 | Banana | endoplasmic reticulum, golgi, vacuole | 72.02 | 72.69 |
| GSMUA_Achr6P04010_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 69.27 | 70.56 |
| EES13770 | Sorghum | endoplasmic reticulum, golgi, vacuole | 68.81 | 69.12 |
| Os08t0278900-01 | Rice | endoplasmic reticulum | 67.89 | 68.2 |
| Os08t0440500-01 | Rice | endoplasmic reticulum, golgi, vacuole | 67.89 | 68.2 |
| TraesCS7A01G330300.1 | Wheat | endoplasmic reticulum | 67.43 | 67.74 |
| TraesCS7D01G327100.1 | Wheat | endoplasmic reticulum | 66.97 | 67.28 |
| Zm00001d032157_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 65.6 | 66.2 |
| Zm00001d050430_P003 | Maize | extracellular | 65.14 | 65.74 |
| TraesCS7D01G160300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.68 | 65.28 |
| EES15057 | Sorghum | endoplasmic reticulum | 64.68 | 65.28 |
| TraesCS7B01G063900.1 | Wheat | golgi | 64.22 | 64.81 |
| TraesCS7A01G159300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 63.76 | 62.9 |
| TraesCS7B01G231000.1 | Wheat | endoplasmic reticulum | 49.54 | 56.84 |
| GSMUA_Achr6P04030_001 | Banana | cytosol | 27.98 | 52.14 |
| GSMUA_Achr3P00940_001 | Banana | cytosol | 16.51 | 45.57 |
| Solyc03g117020.2.1 | Tomato | nucleus | 73.85 | 43.63 |
| HORVU7Hr1G079030.2 | Barley | plastid | 45.41 | 38.37 |
Protein Annotations
| MapMan:19.1.1.2.1.3 | Gene3D:2.80.10.50 | PDB:3MAL | EntrezGene:817049 | ProteinID:AEC07659.1 | ArrayExpress:AT2G25110 |
| EnsemblPlantsGene:AT2G25110 | RefSeq:AT2G25110 | TAIR:AT2G25110 | RefSeq:AT2G25110-TAIR-G | EnsemblPlants:AT2G25110.1 | TAIR:AT2G25110.1 |
| EMBL:AY057588 | EMBL:AY088079 | EMBL:AY143822 | GO:GO:0000030 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005975 |
| GO:GO:0006464 | GO:GO:0006486 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0042742 | GO:GO:0050832 | GO:GO:0052033 | GO:GO:0097502 | InterPro:GlyclTrfase_39-like |
| InterPro:IPR016093 | InterPro:MIR_dom_sf | InterPro:MIR_motif | RefSeq:NP_565585.1 | PFAM:PF02815 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50919 | PANTHER:PTHR10050 | PANTHER:PTHR10050:SF46 | UniProt:Q93ZE8 |
| Symbol:SDF2 | SMART:SM00472 | SUPFAM:SSF82109 | SignalP:SignalP-noTM | UniParc:UPI0000001807 | SEG:seg |
Description
SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
Coordinates
chr2:+:10684118..10686347
Molecular Weight (calculated)
23936.2 Da
IEP (calculated)
8.123
GRAVY (calculated)
-0.477
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.