CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76646
CDX76770
CDX89142
CDY11430
CDY35374
CDY55710
CDY56283
CDY63310

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	CDX76770	AT2G25110.1	19763086
AT2G25110.1	CDY35374	AT2G25110.1	19763086
AT2G25110.1	CDY55710	AT2G25110.1	19763086
AT2G25110.1	CDY56283	AT2G25110.1	19763086
AT2G25110.1	CDX76646	AT3G62600.1	19763086
AT2G25110.1	CDX89142	AT3G62600.1	19763086
AT2G25110.1	CDY11430	AT3G62600.1	19763086
AT2G25110.1	CDY63310	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	98.62	98.62
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	93.58	93.58
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	91.28	90.45
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	90.83	89.59
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	76.15	78.3
KRH52351	Soybean	endoplasmic reticulum	77.52	77.52
KRH61684	Soybean	endoplasmic reticulum	78.9	77.48
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	76.15	76.85
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	73.39	74.07
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	70.64	71.96
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	69.72	70.05
Os08t0278900-01	Rice	endoplasmic reticulum	69.27	69.59
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	68.81	69.12
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	67.89	68.2
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	67.43	67.74
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	66.51	67.13
Zm00001d050430_P003	Maize	extracellular	66.06	66.67
EES15057	Sorghum	endoplasmic reticulum	65.6	66.2
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.14	65.74
TraesCS7B01G063900.1	Wheat	golgi	64.68	65.28
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.14	64.25
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	50.0	57.37
GSMUA_Achr6P04030_001	Banana	cytosol	27.98	52.14
Solyc03g117020.2.1	Tomato	nucleus	75.23	44.44
GSMUA_Achr3P00940_001	Banana	cytosol	16.05	44.3
HORVU7Hr1G079030.2	Barley	plastid	44.95	37.98

Protein Annotations

EnsemblPlants:CDY55710	EnsemblPlantsGene:GSBRNA2T00017213001	Gene3D:2.80.10.50	GO:A0A078J1G7	GO:GO:0005575	GO:GO:0016020
InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46
PFAM:PF02815	PFscan:PS50919	ProteinID:CDY55710	ProteinID:CDY55710.1	SignalP:SignalP-noTM	SMART:SM00472
SUPFAM:SSF82109	UniParc:UPI0004EC9F89	UniProt:A0A078J1G7	MapMan:19.1.1.2.1.3	:	:

Description

BnaC04g37590DBnaC04g37590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1G7]

Coordinates

chrLK033422:+:28466..30602

Molecular Weight (calculated)

24046.3 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.521

Length

218 amino acids

Sequence
(BLAST)

001: MALGFFCLAL FLYLSLDPDS GYTPASAAPS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVTDSN SYWIVKPVPG KTFKQGDAIK
101: NGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDSNS DTGDHWKLTI EGSGKIWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKRAD
201: NVWLAAEGVY LPVNESSK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.