CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76646
CDX76770
CDX89142
CDY11430
CDY35374
CDY55710
CDY56283
CDY63310

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	CDX76770	AT2G25110.1	19763086
AT2G25110.1	CDY35374	AT2G25110.1	19763086
AT2G25110.1	CDY55710	AT2G25110.1	19763086
AT2G25110.1	CDY56283	AT2G25110.1	19763086
AT2G25110.1	CDX76646	AT3G62600.1	19763086
AT2G25110.1	CDX89142	AT3G62600.1	19763086
AT2G25110.1	CDY11430	AT3G62600.1	19763086
AT2G25110.1	CDY63310	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	98.64	98.19
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	91.82	92.66
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	90.91	91.74
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	90.45	91.28
KRH52351	Soybean	endoplasmic reticulum	79.09	79.82
KRH61684	Soybean	endoplasmic reticulum	79.55	78.83
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	76.36	77.78
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	74.55	77.36
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	70.91	72.22
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	69.09	71.03
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	67.73	68.66
Os08t0278900-01	Rice	endoplasmic reticulum	67.27	68.2
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	67.27	68.2
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	66.82	67.74
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	66.82	67.74
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.0	66.2
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	65.0	66.2
EES15057	Sorghum	endoplasmic reticulum	64.55	65.74
TraesCS7B01G063900.1	Wheat	golgi	64.55	65.74
Zm00001d050430_P003	Maize	extracellular	64.55	65.74
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	64.09	63.8
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	48.64	56.32
GSMUA_Achr6P04030_001	Banana	cytosol	28.18	52.99
GSMUA_Achr3P00940_001	Banana	cytosol	16.36	45.57
Solyc03g117020.2.1	Tomato	nucleus	73.64	43.9
HORVU7Hr1G079030.2	Barley	plastid	43.64	37.21

Protein Annotations

EnsemblPlants:CDX76770	EnsemblPlantsGene:GSBRNA2T00127264001	Gene3D:2.80.10.50	GO:A0A078CIQ2	GO:GO:0005575	GO:GO:0016020
InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46
PFAM:PF02815	PFscan:PS50919	ProteinID:CDX76770	ProteinID:CDX76770.1	SEG:seg	SignalP:SignalP-noTM
SMART:SM00472	SUPFAM:SSF82109	UniParc:UPI0004EE7E3E	MapMan:19.1.1.2.1.3	:	:

Description

BnaC08g33560D

Coordinates

chrLK031808:-:982187..984125

Molecular Weight (calculated)

23961.2 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.436

Length

220 amino acids

Sequence
(BLAST)

001: MAMGFFSLAL FLFLSVDSDS GYTSASAAAA SGKEGVEITY GSAMKLMHEK TKCRLHSHDV PYGSGSGQQS VTGFPGVVDS NSYWIVKPVP GTTAKQGDAV
101: MSGATIRLQH MKTRKWLHSH LHASPISGNL EVSCFGDDSN SDTGDHWKLI IEGSGKTWKQ DQRVRLQHID TSGYLHSHDK KYQRIAGGQQ EVCGIREKRA
201: DNVWLAAEGV YLPVNESSSK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.