Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 6
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0008g05820.t01 | |
| VIT_07s0005g01220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25110.1 | VIT_04s0008g05820.t01 | AT2G25110.1 | 19763086 |
| AT2G25110.1 | VIT_07s0005g01220.t01 | AT3G62600.1 | 19763086 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52351 | Soybean | endoplasmic reticulum | 84.26 | 83.49 |
| KRH61684 | Soybean | endoplasmic reticulum | 85.19 | 82.88 |
| VIT_09s0070g00030.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 79.17 | 79.91 |
| Bra032038.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 77.78 | 77.06 |
| CDY35374 | Canola | endoplasmic reticulum, extracellular, golgi | 77.78 | 77.06 |
| CDX76770 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 77.78 | 76.36 |
| CDY55710 | Canola | endoplasmic reticulum, extracellular, golgi | 76.85 | 76.15 |
| CDY56283 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 77.78 | 76.02 |
| Bra007818.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 76.85 | 75.8 |
| AT2G25110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 76.39 | 75.69 |
| GSMUA_Achr6P04010_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 74.54 | 75.23 |
| TraesCS7A01G330300.1 | Wheat | endoplasmic reticulum | 75.46 | 75.12 |
| TraesCS7D01G327100.1 | Wheat | endoplasmic reticulum | 75.46 | 75.12 |
| EES13770 | Sorghum | endoplasmic reticulum, golgi, vacuole | 75.0 | 74.65 |
| Os08t0278900-01 | Rice | endoplasmic reticulum | 75.0 | 74.65 |
| GSMUA_Achr3P13410_001 | Banana | endoplasmic reticulum, golgi, vacuole | 74.54 | 74.54 |
| Os08t0440500-01 | Rice | endoplasmic reticulum, golgi, vacuole | 70.37 | 70.05 |
| EES15057 | Sorghum | endoplasmic reticulum | 69.44 | 69.44 |
| Zm00001d032157_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 68.98 | 68.98 |
| TraesCS7D01G160300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 68.52 | 68.52 |
| Zm00001d050430_P003 | Maize | extracellular | 68.06 | 68.06 |
| TraesCS7B01G063900.1 | Wheat | golgi | 68.06 | 68.06 |
| TraesCS7A01G159300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 68.06 | 66.52 |
| TraesCS7B01G231000.1 | Wheat | endoplasmic reticulum | 55.09 | 62.63 |
| GSMUA_Achr6P04030_001 | Banana | cytosol | 27.78 | 51.28 |
| GSMUA_Achr3P00940_001 | Banana | cytosol | 18.52 | 50.63 |
| HORVU7Hr1G079030.2 | Barley | plastid | 49.54 | 41.47 |
Protein Annotations
| EntrezGene:100243952 | wikigene:100243952 | MapMan:19.1.1.2.1.3 | Gene3D:2.80.10.50 | EMBL:AM460792 | ProteinID:CAN63540 |
| ProteinID:CAN63540.1 | ProteinID:CBI21074 | ProteinID:CBI21074.3 | UniProt:D7SUX5 | EMBL:FN595231 | GO:GO:0000030 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042742 | GO:GO:0050832 | GO:GO:0052033 | GO:GO:0097502 |
| InterPro:GlyclTrfase_39-like | InterPro:IPR016093 | EntrezGene:LOC100243952 | wikigene:LOC100243952 | InterPro:MIR_dom_sf | InterPro:MIR_motif |
| PFAM:PF02815 | PFscan:PS50919 | PANTHER:PTHR10050 | PANTHER:PTHR10050:SF46 | SMART:SM00472 | SUPFAM:SSF82109 |
| SignalP:SignalP-noTM | TIGR:TC53060 | UniParc:UPI0001983124 | ArrayExpress:VIT_04s0008g05820 | EnsemblPlantsGene:VIT_04s0008g05820 | EnsemblPlants:VIT_04s0008g05820.t01 |
| unigene:Vvi.7395 | RefSeq:XP_002285288 | RefSeq:XP_002285288.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:5409130..5416198
Molecular Weight (calculated)
23984.1 Da
IEP (calculated)
8.272
GRAVY (calculated)
-0.491
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MALPFFVLAL FVLFGLGSDH GSASSAHAAN SEEVQITYGT VLKLMHERTK FRLHSHDVPY GSGSGQQSVT SFPNVEDSNS YWIVRPQPGT SAKQGDTIKS
101: GTIIRLQHMK TRKWLHSHLH ASPISGNLEV SCFGSESESD TGDYWRLLIE GSGKTWKQDQ RVRLQHVDTS GYLHSHDKKY TRIAGGQQEV CGVRDKRADN
201: VWLAAEGVYL PVTESK
101: GTIIRLQHMK TRKWLHSHLH ASPISGNLEV SCFGSESESD TGDYWRLLIE GSGKTWKQDQ RVRLQHVDTS GYLHSHDKKY TRIAGGQQEV CGVRDKRADN
201: VWLAAEGVYL PVTESK
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
Arabidopsis Description
SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.