Factsheet for VIT_07s0005g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
endoplasmic reticulum 6
extracellular 4
vacuole 5
plasma membrane 4
golgi 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g02140.t01
VIT_04s0008g05820.t01
VIT_07s0005g01220.t01
VIT_14s0060g02340.t01
VIT_16s0098g01580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62600.1	VIT_14s0060g02340.t01	AT1G09080.1	19763086
AT3G62600.1	VIT_04s0008g05820.t01	AT2G25110.1	19763086
AT3G62600.1	VIT_07s0005g01220.t01	AT3G62600.1	19763086
AT3G62600.1	VIT_02s0025g02140.t01	AT5G28540.1	19763086
AT3G62600.1	VIT_16s0098g01580.t01	AT5G28540.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079610.2.1	Tomato	nucleus	85.22	85.22
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	84.93	84.93
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	80.58	80.81
Bra007687.1-P	Field mustard	golgi	80.58	80.35
CDX76646	Canola	golgi	80.58	80.35
CDY11430	Canola	golgi	80.58	80.35
CDX89142	Canola	endoplasmic reticulum	80.29	79.83
CDY63310	Canola	endoplasmic reticulum	80.29	79.83
AT3G62600.1	Thale cress	endoplasmic reticulum, golgi	80.0	79.77
Os05t0156500-01	Rice	cytosol, nucleus	33.62	79.45
CDY59898	Canola	endoplasmic reticulum, golgi	79.42	78.96
EES17752	Sorghum	endoplasmic reticulum, golgi	79.42	78.29
TraesCS1B01G125100.1	Wheat	nucleus	79.42	78.29
TraesCS1D01G107200.1	Wheat	nucleus	79.13	78.0
CDX67894	Canola	endoplasmic reticulum, golgi	73.91	77.98
TraesCS1A01G099300.1	Wheat	nucleus	78.55	77.43
Zm00001d009783_P004	Maize	mitochondrion	77.68	76.57
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	81.45	75.34
KRH55068	Soybean	cytosol	29.86	75.18
Zm00001d037586_P001	Maize	endoplasmic reticulum	77.1	72.48
Bra003501.1-P	Field mustard	nucleus	75.07	69.81
KXG32445	Sorghum	endoplasmic reticulum	68.41	68.21
HORVU1Hr1G022990.1	Barley	cytosol	76.52	62.12
Zm00001d009210_P001	Maize	endoplasmic reticulum	61.16	51.97
Bra014400.1-P	Field mustard	golgi	79.13	40.87
VIT_08s0105g00350.t01	Wine grape	cytosol	34.78	35.5
VIT_10s0003g00260.t01	Wine grape	cytosol	34.2	34.5
VIT_01s0026g01450.t01	Wine grape	cytosol	27.25	34.43
VIT_04s0008g04300.t01	Wine grape	cytosol	31.59	32.15
VIT_13s0073g00560.t01	Wine grape	cytosol	38.26	31.73
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	31.59	31.23
VIT_06s0080g01230.t01	Wine grape	cytosol	37.68	31.18
VIT_15s0021g02090.t01	Wine grape	cytosol	37.68	29.35
VIT_13s0064g01360.t01	Wine grape	mitochondrion	31.3	23.95
VIT_00s0324g00040.t01	Wine grape	plastid	29.86	21.41
VIT_09s0002g07210.t01	Wine grape	plastid	28.41	20.04
VIT_17s0000g02030.t01	Wine grape	plastid	24.93	17.88
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	17.1	17.0
VIT_12s0034g02190.t01	Wine grape	nucleus	15.65	15.74

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100252105	wikigene:100252105	MapMan:19.1.1.2.1.2	Gene3D:2.60.260.20	UniProt:A5BIW0
EMBL:AM461021	ProteinID:CAN72389	ProteinID:CAN72389.1	ProteinID:CBI36928	ProteinID:CBI36928.3	ncoils:Coil
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100252105	wikigene:LOC100252105	PFAM:PF00226
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR43888	PANTHER:PTHR43888:SF14
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SignalP:SignalP-noTM	TIGR:TC52597	TIGR:TC54005
TMHMM:TMhelix	UniParc:UPI00015210B5	ArrayExpress:VIT_07s0005g01220	EnsemblPlantsGene:VIT_07s0005g01220	EnsemblPlants:VIT_07s0005g01220.t01	unigene:Vvi.1361
RefSeq:XP_002275221	RefSeq:XP_002275221.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:3750414..3757370

Molecular Weight (calculated)

38875.3 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.583

Length

345 amino acids

Sequence
(BLAST)

001: MANRRIAILL FLLCGLASAI TSIAGKSYYD VLQVPKGASD EQIKRAYRKL ALKYHPDKNQ GNEEANKKFA EINNAYEVLS DNEKRNIYDR YGEEGLKQHA
101: ASGGRGGGGM NIQDIFSSFF GGGPAEEEER IVRGDDVIVE LDATLEDLYM GGSLKVWREK NVLKPAPGKR RCNCRNEVYH KQIGPGMFQQ MTEQVCEQCP
201: NVKYEREGYF ITVDIEKGMQ DGQEVVFYDD GEPIVDGEPG DLKFRIRTAP HDQFRREGND LHTTVTITLV QALVGFEKTI KHLDEHLVNI GSKGITKPKE
301: VRKFKGEGMP LHFSTKKGDL YVTFEVLFPS SLTEEQKTKI QEILG

Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)

001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA

Arabidopsis Description

ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.