Factsheet for VIT_10s0003g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0105g00350.t01	Wine grape	cytosol	75.15	76.04
VIT_04s0008g04300.t01	Wine grape	cytosol	60.82	61.36
VIT_17s0000g05530.t01	Wine grape	cytoskeleton, cytosol, nucleus	59.94	58.74
AT2G20550.2	Thale cress	cytosol	47.37	57.04
Solyc10g084300.1.1	Tomato	nucleus	43.86	56.82
VIT_01s0026g01450.t01	Wine grape	cytosol	45.03	56.41
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	43.57	54.58
Bra010365.1-P	Field mustard	mitochondrion	61.7	54.38
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	34.5	34.2
VIT_06s0080g01230.t01	Wine grape	cytosol	38.6	31.65
VIT_13s0073g00560.t01	Wine grape	cytosol	37.13	30.53
VIT_15s0021g02090.t01	Wine grape	cytosol	36.26	27.99
VIT_12s0034g02190.t01	Wine grape	nucleus	26.9	26.82
VIT_09s0002g07210.t01	Wine grape	plastid	30.7	21.47
VIT_00s0324g00040.t01	Wine grape	plastid	29.53	21.0
VIT_17s0000g02030.t01	Wine grape	plastid	27.49	19.54
VIT_13s0064g01360.t01	Wine grape	mitochondrion	25.44	19.29
VIT_18s0001g06970.t01	Wine grape	endoplasmic reticulum, extracellular	19.01	18.73

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100252168	wikigene:100252168	MapMan:19.1.5.2	Gene3D:2.60.260.20	ProteinID:CCB55623
ProteinID:CCB55623.1	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6HM35	EMBL:FN595992
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100252168
wikigene:LOC100252168	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR24078	PANTHER:PTHR24078:SF520	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	TIGR:TC57896
UniParc:UPI00015CCCE5	ArrayExpress:VIT_10s0003g00260	EnsemblPlantsGene:VIT_10s0003g00260	EnsemblPlants:VIT_10s0003g00260.t01	unigene:Vvi.7032	RefSeq:XP_002278979
RefSeq:XP_002278979.2	RefSeq:XP_003633023	RefSeq:XP_003633023.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:1559664..1561563

Molecular Weight (calculated)

37848.3 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.651

Length

342 amino acids

Sequence
(BLAST)

001: MGVDYYKILQ VDKSSKDEDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYEVLSDP QKRAVYDQYG EEGLKGQVPP PDAGVPGGAT YFQTGDGPTM
101: FRFNPRNAND IFAEFFGYSS PFGGMGGTGG GGMRGSRFSS GMFGDDIFSS FGDSRPMSQG PRKAPPIENT LPCSLEDLYK GTTKKMKISR EIMDASGKTI
201: PVEEILTIEI KPGWKKGTKI TFPEKGNEQP NVIPADLVFI IDEKPHSKFT REGNDLVVTQ KITLAEALTG YTVHLTTLDG RSLSIPINNA IHPNYEEVVP
301: KEGMPIPKEP SKRGNLRIKF NIKFPTRLTA EQKSGIKKLL GS

Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)

001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG

Arabidopsis Description

At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.