Factsheet for Solyc03g007650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084300.1.1	Tomato	nucleus	93.41	96.59
AT2G20550.2	Thale cress	cytosol	50.92	48.94
VIT_10s0003g00260.t01	Wine grape	cytosol	54.58	43.57
Solyc09g005350.2.1	Tomato	nucleus, plastid	50.55	40.59
Solyc02g077670.2.1	Tomato	cytosol	50.55	40.23
Solyc06g071110.2.1	Tomato	nucleus	46.89	37.98
Bra010365.1-P	Field mustard	mitochondrion	52.75	37.11
Solyc05g006820.2.1	Tomato	plastid	42.12	36.98
Solyc04g005820.2.1	Tomato	cytosol, nucleus	42.12	35.94
Solyc07g053620.2.1	Tomato	nucleus	21.61	26.34
Solyc11g044450.1.1	Tomato	nucleus	28.57	22.67
Solyc06g060240.1.1	Tomato	cytosol	29.67	21.09
Solyc01g079610.2.1	Tomato	nucleus	26.37	20.87
Solyc05g050820.2.1	Tomato	cytosol	16.85	19.33
Solyc01g090550.2.1	Tomato	nucleus	26.74	17.22
Solyc04g009770.2.1	Tomato	nucleus	26.01	16.99
Solyc11g071830.1.1	Tomato	plastid	26.01	16.99
Solyc11g006460.1.1	Tomato	nucleus	25.64	16.71
Solyc05g055160.2.1	Tomato	nucleus	24.91	16.23
Solyc01g105340.2.1	Tomato	plastid	17.95	13.88
Solyc03g116790.2.1	Tomato	plastid	20.88	11.45
Solyc01g081330.2.1	Tomato	plastid	16.12	10.14
Solyc01g086740.2.1	Tomato	mitochondrion	15.38	9.48
Solyc05g050810.2.1	Tomato	nucleus	8.79	9.34
Solyc03g118500.2.1	Tomato	plastid	17.22	8.83

Protein Annotations

EnsemblPlants:Solyc03g007650.1.1	EnsemblPlantsGene:Solyc03g007650.1	Gene3D:2.20.25.170	Gene3D:2.60.260.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:DnaJ_C
InterPro:HSP40/DnaJ_pept-bd	PANTHER:PTHR24078	PANTHER:PTHR24078:SF298	PFAM:PF01556	SUPFAM:SSF49493	UniParc:UPI000276815C
UniProt:K4BEI7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3:-:2189479..2190300

Molecular Weight (calculated)

30521.2 Da

IEP (calculated)

10.398

GRAVY (calculated)

-0.481

Length

273 amino acids

Sequence
(BLAST)

001: MNESSTSLRI TRGSPLHVNV VDILPSFSMG LTQEFGVNVR SLGKSKQLIQ EQTMEELRSK KKNDPMAVQQ VNHGVPMHSS VPRKEAPVQQ NLPCNLEDLY
101: KGTTKKMKIS REIADSSGKR IVQEILTIEI KPGWKKGTKI TFQEKGNEQP GVIPADLVFI IDEKPHKVFS RDGNDLIVTQ KIPSAEALTG TNVQLTTLDG
201: RNLTIPINNV IQPNYEHIVP GEGMPLPKDP SKKGNLRIKF DIKFPARLTV AQKSGIKELL GLKHKLRYNF FVN

Best Arabidopsis Sequence Match ( AT2G20550.2 )
(BLAST)

001: MSHPRNADDI FSEFFGVSRP SGPSGPRNAD DIYSEFFGVS SPSGPRNKDD IFSEFFEVSN PSGPRDKDDI SAEYFGVPSP SGSGSSGGRE GGGGGGGTMH
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG

Arabidopsis Description

At2g20550 [Source:UniProtKB/TrEMBL;Acc:Q9SIL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.