Factsheet for Solyc05g006820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045398	Potato	mitochondrion	98.07	98.07
Solyc04g005820.2.1	Tomato	cytosol, nucleus	79.42	77.19
KRH69388	Soybean	cytosol	55.63	62.68
KRH74747	Soybean	cytosol	55.63	62.45
VIT_01s0026g01450.t01	Wine grape	cytosol	54.66	62.27
CDY20944	Canola	cytosol	60.45	61.64
Solyc06g071110.2.1	Tomato	nucleus	66.56	61.42
CDY45143	Canola	cytoskeleton, cytosol, nucleus	64.63	60.73
KRG99186	Soybean	cytosol	55.95	60.21
KRH45833	Soybean	cytosol	55.95	60.21
AT1G59725.1	Thale cress	cytoskeleton, cytosol, nucleus	63.99	60.12
CDY30900	Canola	cytoskeleton, cytosol, nucleus	64.95	59.94
CDY20637	Canola	cytosol	61.41	59.69
Bra027838.1-P	Field mustard	cytoskeleton, cytosol, nucleus	64.95	59.41
CDY37986	Canola	cytosol	44.05	58.05
AT1G10350.1	Thale cress	cytosol	63.99	57.02
Bra018443.1-P	Field mustard	nucleus	61.74	55.01
Solyc09g005350.2.1	Tomato	nucleus, plastid	59.49	54.41
Solyc02g077670.2.1	Tomato	cytosol	57.88	52.48
KRH60063	Soybean	endoplasmic reticulum, golgi	31.83	50.0
Solyc07g053620.2.1	Tomato	nucleus	33.44	46.43
Solyc10g084300.1.1	Tomato	nucleus	37.62	44.32
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	36.98	42.12
Solyc11g044450.1.1	Tomato	nucleus	35.05	31.69
Solyc01g079610.2.1	Tomato	nucleus	34.73	31.3
Solyc11g006460.1.1	Tomato	nucleus	37.94	28.16
Solyc05g055160.2.1	Tomato	nucleus	37.94	28.16
Solyc04g009770.2.1	Tomato	nucleus	37.62	27.99
Solyc11g071830.1.1	Tomato	plastid	37.3	27.75
Solyc01g090550.2.1	Tomato	nucleus	36.66	26.89
Solyc05g050810.2.1	Tomato	nucleus	19.94	24.12
Solyc01g105340.2.1	Tomato	plastid	27.33	24.08
Solyc06g060240.1.1	Tomato	cytosol	29.58	23.96
Solyc05g050820.2.1	Tomato	cytosol	17.36	22.69
Solyc01g086740.2.1	Tomato	mitochondrion	26.69	18.74
Solyc03g116790.2.1	Tomato	plastid	29.26	18.27
Solyc01g081330.2.1	Tomato	plastid	24.12	17.28
Solyc03g118500.2.1	Tomato	plastid	27.33	15.98

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4BWK8
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078
PANTHER:PTHR24078:SF175	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	EnsemblPlantsGene:Solyc05g006820.2	EnsemblPlants:Solyc05g006820.2.1
UniParc:UPI0002765892	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:1449551..1452844

Molecular Weight (calculated)

34482.1 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.647

Length

311 amino acids

Sequence
(BLAST)

001: MGVDYYNLLK VSRNASEEDL KRSYKRLAMK WHPDKNSQNN KEAEAKFKQI SEAYDVLSDP QKRQIYDLYG DDALKSGQFA SASPTSAGSG TGNGRGFRFN
101: TRDAEDIFAE FFGGSEGLSS GSGAGVGRKA APVENKLPCS LEELYKGSRR KMKISRILLD DSGKPTTVEE VLAIHIKPGW KKGTKITFPE KGDYEYGAAP
201: GDLIFVIDEK PHAVFKRDGN DLVTNQKISL LDALTGKTIS LTTLDGRELT IPIKEIVKPG QELIIQNEGM PISKERGKKG NLKIKFDIKF PSRLNADQKS
301: DLRRVLCRSI D

Best Arabidopsis Sequence Match ( AT1G10350.1 )
(BLAST)

001: MGVDYYNVLK VNRNANEDDL KKSYRRMAMK WHPDKNPTSK KEAEAKFKQI SEAYDVLSDP QRRQIYDQYG EEGLKSTDLP TAAETAAHQQ QRSYSSSNSE
101: FRYYPRDAED IFAEFFGESG DAFGGGSSGR TRGDGGDGGG RRFKSAEAGS QANRKTPPTN KKTTPPANRK APAIESKLAC TLEELYKGAK KKMRISRVVP
201: DDFGKPKTVQ EILKIDIKPG WKKGTKITFP EKGNQEPGVT PADLIFVVDE KPHSVFKRDG NDLILEKKVS LIDALTGLTI SVTTLDGRSL TIPVLDIVKP
301: GQEIVIPNEG MPTKDPLKRG DLRVTFEILF PSRLTSEQKN DLKRVLGGS

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SY77]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.