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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • cytosol 2
  • golgi 1
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, golgi, mitochondrion, nucleus
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024267 Potato cytoskeleton, cytosol, nucleus 92.41 60.53
GSMUA_Achr6P13820_001 Banana cytosol 37.05 48.54
Solyc02g077670.2.1 Tomato cytosol 68.3 44.61
Zm00001d009556_P001 Maize cytoskeleton, cytosol, nucleus 69.64 44.44
TraesCS1D01G403500.1 Wheat cytosol 70.09 43.49
HORVU1Hr1G087070.1 Barley cytosol 70.54 42.82
Solyc09g005350.2.1 Tomato nucleus, plastid 64.73 42.65
Os05t0562300-01 Rice nucleus 68.75 42.54
EES19943 Sorghum cytosol 68.3 42.27
Zm00001d039000_P001 Maize mitochondrion 68.3 42.27
TraesCS1A01G395300.1 Wheat cytosol 70.09 42.2
TraesCS1B01G423600.1 Wheat cytosol 70.98 42.06
GSMUA_Achr3P15480_001 Banana cytosol 53.12 40.75
Solyc06g071110.2.1 Tomato nucleus 50.89 33.83
Solyc05g006820.2.1 Tomato plastid 46.43 33.44
Solyc04g005820.2.1 Tomato cytosol, nucleus 45.09 31.56
Solyc05g050810.2.1 Tomato nucleus 30.36 26.46
Solyc10g084300.1.1 Tomato nucleus 25.89 21.97
Solyc03g007650.1.1 Tomato cytosol, mitochondrion, nucleus 26.34 21.61
Solyc01g079610.2.1 Tomato nucleus 31.25 20.29
Solyc11g071830.1.1 Tomato plastid 35.71 19.14
Solyc01g090550.2.1 Tomato nucleus 35.27 18.63
Solyc05g055160.2.1 Tomato nucleus 34.82 18.62
Solyc11g006460.1.1 Tomato nucleus 34.38 18.38
Solyc04g009770.2.1 Tomato nucleus 33.48 17.94
Solyc01g105340.2.1 Tomato plastid 26.79 17.0
Solyc11g044450.1.1 Tomato nucleus 23.66 15.41
Solyc03g116790.2.1 Tomato plastid 30.36 13.65
Solyc01g086740.2.1 Tomato mitochondrion 24.11 12.19
Solyc03g118500.2.1 Tomato plastid 27.68 11.65
Solyc01g081330.2.1 Tomato plastid 21.43 11.06
Solyc06g060240.1.1 Tomato cytosol 13.39 7.81
Solyc05g050820.2.1 Tomato cytosol 3.12 2.94
Protein Annotations
EnsemblPlants:Solyc07g053620.2.1EnsemblPlantsGene:Solyc07g053620.2Gene3D:1.10.287.110Gene3D:2.20.25.170InterPro:DnaJ_domainInterPro:DnaJ_domain_CS
InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfPANTHER:PTHR24078PANTHER:PTHR24078:SF298PFAM:PF00226
PFscan:PS50076PRINTS:PR00625ScanProsite:PS00636SEG:segSMART:SM00271SUPFAM:SSF46565
UniParc:UPI000276C00EUniProt:K4CFQ7MapMan:35.1:::
Description
No Description!
Coordinates
chr7:-:62051886..62054044
Molecular Weight (calculated)
23871.0 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.608
Length
224 amino acids
Sequence
(BLAST)
001: MGVDYYKVLG VDKNATDDDL KKAYRKLAMK WHPDKNPQNK KEAEAKFKQI SEAYDVLSDS QKKAVYDQYG EEGLKGGVPP PGAGGPGAGS TYFSTGDGPT
101: SFRFNSRNAD DIFAEFFGFS TPYGPGGGRG SRFGNMFTDD IFAASFGEGG GGGGVPMHSS VPRKEAPVQQ NLPCNLEDLY KGTTKKMKIS REIADSSGLS
201: ASHPCGVALL QTLNGCGRLC ALGR
Best Arabidopsis Sequence Match ( AT5G01390.4 )
(BLAST)
001: MGVDFYKVLE VDRSANDDEL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRAIYEQYG EEGLNQAPPP GAGGGYPGGS DAGASFRFNP
101: RSADDIFSEF FGFTRPSFGT GSDSRAGPSG FRYGDDIFAS FRAATTGGEA SIPSRKSAPI ERQLPCSLED LYKGVSKKMK ISRDVLDSSG FVFPLMITHL
201: AFSRGIYLLL LANFFLEQFK LSFCGVWFQM FSL
Arabidopsis Description
DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9M034]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.