Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- cytosol 2
- golgi 1
- nucleus 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400024267 | Potato | cytoskeleton, cytosol, nucleus | 92.41 | 60.53 |
GSMUA_Achr6P13820_001 | Banana | cytosol | 37.05 | 48.54 |
Solyc02g077670.2.1 | Tomato | cytosol | 68.3 | 44.61 |
Zm00001d009556_P001 | Maize | cytoskeleton, cytosol, nucleus | 69.64 | 44.44 |
TraesCS1D01G403500.1 | Wheat | cytosol | 70.09 | 43.49 |
HORVU1Hr1G087070.1 | Barley | cytosol | 70.54 | 42.82 |
Solyc09g005350.2.1 | Tomato | nucleus, plastid | 64.73 | 42.65 |
Os05t0562300-01 | Rice | nucleus | 68.75 | 42.54 |
EES19943 | Sorghum | cytosol | 68.3 | 42.27 |
Zm00001d039000_P001 | Maize | mitochondrion | 68.3 | 42.27 |
TraesCS1A01G395300.1 | Wheat | cytosol | 70.09 | 42.2 |
TraesCS1B01G423600.1 | Wheat | cytosol | 70.98 | 42.06 |
GSMUA_Achr3P15480_001 | Banana | cytosol | 53.12 | 40.75 |
Solyc06g071110.2.1 | Tomato | nucleus | 50.89 | 33.83 |
Solyc05g006820.2.1 | Tomato | plastid | 46.43 | 33.44 |
Solyc04g005820.2.1 | Tomato | cytosol, nucleus | 45.09 | 31.56 |
Solyc05g050810.2.1 | Tomato | nucleus | 30.36 | 26.46 |
Solyc10g084300.1.1 | Tomato | nucleus | 25.89 | 21.97 |
Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 26.34 | 21.61 |
Solyc01g079610.2.1 | Tomato | nucleus | 31.25 | 20.29 |
Solyc11g071830.1.1 | Tomato | plastid | 35.71 | 19.14 |
Solyc01g090550.2.1 | Tomato | nucleus | 35.27 | 18.63 |
Solyc05g055160.2.1 | Tomato | nucleus | 34.82 | 18.62 |
Solyc11g006460.1.1 | Tomato | nucleus | 34.38 | 18.38 |
Solyc04g009770.2.1 | Tomato | nucleus | 33.48 | 17.94 |
Solyc01g105340.2.1 | Tomato | plastid | 26.79 | 17.0 |
Solyc11g044450.1.1 | Tomato | nucleus | 23.66 | 15.41 |
Solyc03g116790.2.1 | Tomato | plastid | 30.36 | 13.65 |
Solyc01g086740.2.1 | Tomato | mitochondrion | 24.11 | 12.19 |
Solyc03g118500.2.1 | Tomato | plastid | 27.68 | 11.65 |
Solyc01g081330.2.1 | Tomato | plastid | 21.43 | 11.06 |
Solyc06g060240.1.1 | Tomato | cytosol | 13.39 | 7.81 |
Solyc05g050820.2.1 | Tomato | cytosol | 3.12 | 2.94 |
Protein Annotations
EnsemblPlants:Solyc07g053620.2.1 | EnsemblPlantsGene:Solyc07g053620.2 | Gene3D:1.10.287.110 | Gene3D:2.20.25.170 | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | PFAM:PF00226 |
PFscan:PS50076 | PRINTS:PR00625 | ScanProsite:PS00636 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 |
UniParc:UPI000276C00E | UniProt:K4CFQ7 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7:-:62051886..62054044
Molecular Weight (calculated)
23871.0 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.608
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDYYKVLG VDKNATDDDL KKAYRKLAMK WHPDKNPQNK KEAEAKFKQI SEAYDVLSDS QKKAVYDQYG EEGLKGGVPP PGAGGPGAGS TYFSTGDGPT
101: SFRFNSRNAD DIFAEFFGFS TPYGPGGGRG SRFGNMFTDD IFAASFGEGG GGGGVPMHSS VPRKEAPVQQ NLPCNLEDLY KGTTKKMKIS REIADSSGLS
201: ASHPCGVALL QTLNGCGRLC ALGR
101: SFRFNSRNAD DIFAEFFGFS TPYGPGGGRG SRFGNMFTDD IFAASFGEGG GGGGVPMHSS VPRKEAPVQQ NLPCNLEDLY KGTTKKMKIS REIADSSGLS
201: ASHPCGVALL QTLNGCGRLC ALGR
001: MGVDFYKVLE VDRSANDDEL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRAIYEQYG EEGLNQAPPP GAGGGYPGGS DAGASFRFNP
101: RSADDIFSEF FGFTRPSFGT GSDSRAGPSG FRYGDDIFAS FRAATTGGEA SIPSRKSAPI ERQLPCSLED LYKGVSKKMK ISRDVLDSSG FVFPLMITHL
201: AFSRGIYLLL LANFFLEQFK LSFCGVWFQM FSL
101: RSADDIFSEF FGFTRPSFGT GSDSRAGPSG FRYGDDIFAS FRAATTGGEA SIPSRKSAPI ERQLPCSLED LYKGVSKKMK ISRDVLDSSG FVFPLMITHL
201: AFSRGIYLLL LANFFLEQFK LSFCGVWFQM FSL
Arabidopsis Description
DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9M034]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.