Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
plastid: 26371478 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G44110.1 | Solyc03g113720.2.1 | AT3G48100.1 | 18642946 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400005019 | Potato | cytosol | 98.81 | 98.81 |
Solyc05g055160.2.1 | Tomato | nucleus | 92.36 | 92.36 |
VIT_13s0073g00560.t01 | Wine grape | cytosol | 89.74 | 90.38 |
Solyc04g009770.2.1 | Tomato | nucleus | 89.98 | 90.19 |
VIT_06s0080g01230.t01 | Wine grape | cytosol | 88.78 | 89.21 |
KRH25334 | Soybean | nucleus | 88.31 | 88.73 |
KRG88903 | Soybean | nucleus | 87.83 | 88.25 |
KRH22611 | Soybean | nucleus | 85.92 | 86.33 |
KRH26709 | Soybean | nucleus | 84.73 | 85.13 |
AT3G44110.1 | Thale cress | nucleus | 84.01 | 83.81 |
CDX92386 | Canola | nucleus | 84.25 | 83.65 |
Bra002385.1-P | Field mustard | nucleus | 84.25 | 83.65 |
CDX92385 | Canola | nucleus | 84.01 | 83.41 |
Bra002386.1-P | Field mustard | nucleus | 83.77 | 83.18 |
CDY65546 | Canola | nucleus | 83.29 | 82.9 |
CDY09117 | Canola | nucleus | 82.82 | 82.03 |
Bra020169.1-P | Field mustard | nucleus | 82.58 | 81.8 |
AT5G22060.1 | Thale cress | cytosol | 81.15 | 81.15 |
Solyc11g071830.1.1 | Tomato | plastid | 80.91 | 81.1 |
Bra006608.1-P | Field mustard | nucleus | 76.13 | 78.19 |
CDX88812 | Canola | nucleus | 76.13 | 78.19 |
CDX70980 | Canola | nucleus | 74.22 | 76.41 |
CDY16617 | Canola | nucleus | 36.75 | 74.04 |
Solyc01g090550.2.1 | Tomato | nucleus | 74.46 | 73.58 |
Solyc05g050820.2.1 | Tomato | cytosol | 35.08 | 61.76 |
Solyc05g050810.2.1 | Tomato | nucleus | 32.7 | 53.31 |
Solyc01g079610.2.1 | Tomato | nucleus | 32.22 | 39.13 |
Solyc05g006820.2.1 | Tomato | plastid | 28.16 | 37.94 |
Solyc04g005820.2.1 | Tomato | cytosol, nucleus | 27.92 | 36.56 |
Solyc09g005350.2.1 | Tomato | nucleus, plastid | 29.12 | 35.88 |
Solyc02g077670.2.1 | Tomato | cytosol | 29.12 | 35.57 |
Solyc06g071110.2.1 | Tomato | nucleus | 28.16 | 35.01 |
Solyc07g053620.2.1 | Tomato | nucleus | 18.38 | 34.38 |
Solyc01g105340.2.1 | Tomato | plastid | 24.58 | 29.18 |
Solyc10g084300.1.1 | Tomato | nucleus | 16.95 | 26.89 |
Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 16.71 | 25.64 |
Solyc11g044450.1.1 | Tomato | nucleus | 20.76 | 25.29 |
Solyc01g086740.2.1 | Tomato | mitochondrion | 26.01 | 24.61 |
Solyc03g116790.2.1 | Tomato | plastid | 27.68 | 23.29 |
Solyc03g118500.2.1 | Tomato | plastid | 26.97 | 21.24 |
Solyc01g081330.2.1 | Tomato | plastid | 21.48 | 20.74 |
Solyc06g060240.1.1 | Tomato | cytosol | 14.56 | 15.89 |
Protein Annotations
Gene3D:1.10.287.110 | MapMan:19.1.5.2 | Gene3D:2.10.230.10 | Gene3D:2.60.260.20 | InterPro:DnaJ | InterPro:DnaJ_C |
InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005524 | GO:GO:0006457 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 |
GO:GO:0009987 | GO:GO:0031072 | GO:GO:0046872 | GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:HSP_DnaJ_Cys-rich_dom |
InterPro:HSP_DnaJ_Cys-rich_dom_sf | InterPro:IPR001305 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | UniProt:K4D4Q9 |
HAMAP:MF_01152 | PFAM:PF00226 | PFAM:PF00684 | PFAM:PF01556 | PRINTS:PR00625 | ScanProsite:PS00636 |
PFscan:PS50076 | PFscan:PS51188 | PANTHER:PTHR43888 | PANTHER:PTHR43888:SF4 | SMART:SM00271 | SUPFAM:SSF46565 |
SUPFAM:SSF49493 | SUPFAM:SSF57938 | EnsemblPlantsGene:Solyc11g006460.1 | EnsemblPlants:Solyc11g006460.1.1 | UniParc:UPI0002769DD2 | SEG:seg |
Description
No Description!
Coordinates
chr11:-:1149792..1152899
Molecular Weight (calculated)
46611.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.789
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGRAPKKSD NTKYYEILGV PKAASQEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GGGNPFGGGG SSRARRQRRG EDVIHPLKVS LEDLYNGTSK KLSLSRNVLC SKCKGKGSKS GASMKCSGCQ GSGMKVSIRQ LGPSMIQQMQ HPCNECKGTG
201: EMISDKDRCP QCKGEKVVQE KKVLEVHVEK GMQNGQKVTF PGEADEAPDT ITGDIVFVLQ QKEHPKFKRK GDDLFVEHTL TLTEALCGFQ FVLTHLDNRQ
301: LLIKSQPGEV VKPDQFKAIN DEGMPMYQRP FMRGKMYIHF TVDFPESLTA EQCKNLEAVL PPKPKLQVSD MELDECEETT LHDVNIEDEM RRKQQAAQEA
401: YDEDDDMPGG AQRVQCAQQ
101: GGGNPFGGGG SSRARRQRRG EDVIHPLKVS LEDLYNGTSK KLSLSRNVLC SKCKGKGSKS GASMKCSGCQ GSGMKVSIRQ LGPSMIQQMQ HPCNECKGTG
201: EMISDKDRCP QCKGEKVVQE KKVLEVHVEK GMQNGQKVTF PGEADEAPDT ITGDIVFVLQ QKEHPKFKRK GDDLFVEHTL TLTEALCGFQ FVLTHLDNRQ
301: LLIKSQPGEV VKPDQFKAIN DEGMPMYQRP FMRGKMYIHF TVDFPESLTA EQCKNLEAVL PPKPKLQVSD MELDECEETT LHDVNIEDEM RRKQQAAQEA
401: YDEDDDMPGG AQRVQCAQQ
001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ
Arabidopsis Description
ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.