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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G44110.1 Solyc03g113720.2.1 AT3G48100.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400005019 Potato cytosol 98.81 98.81
Solyc05g055160.2.1 Tomato nucleus 92.36 92.36
VIT_13s0073g00560.t01 Wine grape cytosol 89.74 90.38
Solyc04g009770.2.1 Tomato nucleus 89.98 90.19
VIT_06s0080g01230.t01 Wine grape cytosol 88.78 89.21
KRH25334 Soybean nucleus 88.31 88.73
KRG88903 Soybean nucleus 87.83 88.25
KRH22611 Soybean nucleus 85.92 86.33
KRH26709 Soybean nucleus 84.73 85.13
AT3G44110.1 Thale cress nucleus 84.01 83.81
CDX92386 Canola nucleus 84.25 83.65
Bra002385.1-P Field mustard nucleus 84.25 83.65
CDX92385 Canola nucleus 84.01 83.41
Bra002386.1-P Field mustard nucleus 83.77 83.18
CDY65546 Canola nucleus 83.29 82.9
CDY09117 Canola nucleus 82.82 82.03
Bra020169.1-P Field mustard nucleus 82.58 81.8
AT5G22060.1 Thale cress cytosol 81.15 81.15
Solyc11g071830.1.1 Tomato plastid 80.91 81.1
Bra006608.1-P Field mustard nucleus 76.13 78.19
CDX88812 Canola nucleus 76.13 78.19
CDX70980 Canola nucleus 74.22 76.41
CDY16617 Canola nucleus 36.75 74.04
Solyc01g090550.2.1 Tomato nucleus 74.46 73.58
Solyc05g050820.2.1 Tomato cytosol 35.08 61.76
Solyc05g050810.2.1 Tomato nucleus 32.7 53.31
Solyc01g079610.2.1 Tomato nucleus 32.22 39.13
Solyc05g006820.2.1 Tomato plastid 28.16 37.94
Solyc04g005820.2.1 Tomato cytosol, nucleus 27.92 36.56
Solyc09g005350.2.1 Tomato nucleus, plastid 29.12 35.88
Solyc02g077670.2.1 Tomato cytosol 29.12 35.57
Solyc06g071110.2.1 Tomato nucleus 28.16 35.01
Solyc07g053620.2.1 Tomato nucleus 18.38 34.38
Solyc01g105340.2.1 Tomato plastid 24.58 29.18
Solyc10g084300.1.1 Tomato nucleus 16.95 26.89
Solyc03g007650.1.1 Tomato cytosol, mitochondrion, nucleus 16.71 25.64
Solyc11g044450.1.1 Tomato nucleus 20.76 25.29
Solyc01g086740.2.1 Tomato mitochondrion 26.01 24.61
Solyc03g116790.2.1 Tomato plastid 27.68 23.29
Solyc03g118500.2.1 Tomato plastid 26.97 21.24
Solyc01g081330.2.1 Tomato plastid 21.48 20.74
Solyc06g060240.1.1 Tomato cytosol 14.56 15.89
Protein Annotations
Gene3D:1.10.287.110MapMan:19.1.5.2Gene3D:2.10.230.10Gene3D:2.60.260.20InterPro:DnaJInterPro:DnaJ_C
InterPro:DnaJ_domainInterPro:DnaJ_domain_CSGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005524GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009408GO:GO:0009628
GO:GO:0009987GO:GO:0031072GO:GO:0046872GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdInterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sfInterPro:IPR001305InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfUniProt:K4D4Q9
HAMAP:MF_01152PFAM:PF00226PFAM:PF00684PFAM:PF01556PRINTS:PR00625ScanProsite:PS00636
PFscan:PS50076PFscan:PS51188PANTHER:PTHR43888PANTHER:PTHR43888:SF4SMART:SM00271SUPFAM:SSF46565
SUPFAM:SSF49493SUPFAM:SSF57938EnsemblPlantsGene:Solyc11g006460.1EnsemblPlants:Solyc11g006460.1.1UniParc:UPI0002769DD2SEG:seg
Description
No Description!
Coordinates
chr11:-:1149792..1152899
Molecular Weight (calculated)
46611.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.789
Length
419 amino acids
Sequence
(BLAST)
001: MFGRAPKKSD NTKYYEILGV PKAASQEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GGGNPFGGGG SSRARRQRRG EDVIHPLKVS LEDLYNGTSK KLSLSRNVLC SKCKGKGSKS GASMKCSGCQ GSGMKVSIRQ LGPSMIQQMQ HPCNECKGTG
201: EMISDKDRCP QCKGEKVVQE KKVLEVHVEK GMQNGQKVTF PGEADEAPDT ITGDIVFVLQ QKEHPKFKRK GDDLFVEHTL TLTEALCGFQ FVLTHLDNRQ
301: LLIKSQPGEV VKPDQFKAIN DEGMPMYQRP FMRGKMYIHF TVDFPESLTA EQCKNLEAVL PPKPKLQVSD MELDECEETT LHDVNIEDEM RRKQQAAQEA
401: YDEDDDMPGG AQRVQCAQQ
Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)
001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ
Arabidopsis Description
ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.