Factsheet for Solyc09g005350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059397	Potato	cytosol	99.71	99.71
KRG88624	Soybean	nucleus	83.82	84.57
KRH65726	Soybean	nucleus	83.53	84.27
VIT_08s0105g00350.t01	Wine grape	cytosol	83.53	84.02
KRH75968	Soybean	nucleus	82.35	83.09
CDY64940	Canola	nucleus	79.71	82.62
Bra029729.1-P	Field mustard	nucleus	79.41	82.32
CDY68815	Canola	cytoskeleton, cytosol, nucleus	80.0	81.44
AT3G08910.1	Thale cress	nucleus	77.35	81.42
Bra001337.1-P	Field mustard	cytoskeleton, cytosol, nucleus	79.71	81.14
CDY27963	Canola	cytosol	77.94	80.55
CDY07893	Canola	cytosol	76.47	80.5
CDY58657	Canola	cytosol	77.06	80.37
CDY22173	Canola	cytosol	79.12	80.06
Bra040063.1-P	Field mustard	cytoskeleton, cytosol, nucleus	75.88	79.14
AT5G01390.1	Thale cress	cytosol	75.29	76.42
Solyc02g077670.2.1	Tomato	cytosol	70.29	69.68
Zm00001d010958_P001	Maize	cytosol	62.94	65.64
EES17644	Sorghum	cytosol	60.29	65.5
Solyc07g053620.2.1	Tomato	nucleus	42.65	64.73
TraesCS1A01G070300.1	Wheat	cytosol	59.41	59.59
Solyc05g006820.2.1	Tomato	plastid	54.41	59.49
Solyc04g005820.2.1	Tomato	cytosol, nucleus	55.29	58.75
Solyc06g071110.2.1	Tomato	nucleus	57.94	58.46
TraesCS1D01G072800.1	Wheat	nucleus	59.12	58.43
TraesCS1B01G088700.1	Wheat	cytosol	59.41	58.21
HORVU1Hr1G015040.2	Barley	plastid	60.29	53.52
GSMUA_Achr6P15600_001	Banana	cytosol	69.41	53.39
Solyc10g084300.1.1	Tomato	nucleus	40.88	52.65
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	40.59	50.55
HORVU1Hr1G015060.2	Barley	plastid	32.06	38.25
Solyc01g079610.2.1	Tomato	nucleus	36.18	35.65
Solyc11g044450.1.1	Tomato	nucleus	34.71	34.3
Solyc11g006460.1.1	Tomato	nucleus	35.88	29.12
Solyc04g009770.2.1	Tomato	nucleus	35.59	28.95
Solyc11g071830.1.1	Tomato	plastid	35.59	28.95
Solyc05g055160.2.1	Tomato	nucleus	35.59	28.88
Solyc01g090550.2.1	Tomato	nucleus	35.88	28.77
Solyc05g050810.2.1	Tomato	nucleus	20.59	27.24
Solyc01g105340.2.1	Tomato	plastid	27.65	26.63
Solyc06g060240.1.1	Tomato	cytosol	28.53	25.26
Solyc01g086740.2.1	Tomato	mitochondrion	26.18	20.09
Solyc05g050820.2.1	Tomato	cytosol	13.53	19.33
Solyc03g116790.2.1	Tomato	plastid	28.24	19.28
Solyc01g081330.2.1	Tomato	plastid	24.41	19.12
Solyc03g118500.2.1	Tomato	plastid	27.35	17.48

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.20.25.170	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4CQ25	PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR24078	PANTHER:PTHR24078:SF298	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	EnsemblPlantsGene:Solyc09g005350.2
EnsemblPlants:Solyc09g005350.2.1	UniParc:UPI000276B10E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:270972..276505

Molecular Weight (calculated)

37381.4 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.664

Length

340 amino acids

Sequence
(BLAST)

001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRVVYDQYG EEGLKGQVPP PGAGGFSGPS DGGGHGSFRF
101: NPRSADDIFS EFFGFSTPYG GMGDMGGRAG GPSFSRGMFG EDIFTSFRNA AGEGASGNAP RKAAPIERAL PCSLEDLYKG TTKKMKISRE VTDATGRPST
201: TEEILTIDIK PGWKKGTKIT FPEKGNEQRG IIPSDLVFII DEKPHSVFKR DGNDLVVTQK IPLVEALTGY TAQITTLDGR NLTVPINSII SPNYEEVIKG
301: EGMPIPKEPS RKGNLRVKFN IKFPSKLTSE QKAGIKRYLT

Best Arabidopsis Sequence Match ( AT3G08910.1 )
(BLAST)

001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS

Arabidopsis Description

At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.