Factsheet for Solyc04g009770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065401	Potato	nucleus	98.8	98.57
Solyc05g055160.2.1	Tomato	nucleus	90.91	90.69
Solyc11g006460.1.1	Tomato	nucleus	90.19	89.98
VIT_06s0080g01230.t01	Wine grape	cytosol	87.56	87.77
VIT_13s0073g00560.t01	Wine grape	cytosol	86.6	87.02
KXG37403	Sorghum	cytosol	86.84	86.84
Os03t0787300-01	Rice	plasma membrane	86.12	86.33
KRH25334	Soybean	nucleus	85.65	85.85
Zm00001d034368_P001	Maize	extracellular, plasma membrane	85.65	85.65
KRG88903	Soybean	nucleus	85.17	85.37
KRH22611	Soybean	nucleus	85.17	85.37
Zm00001d013111_P001	Maize	extracellular, plasma membrane	85.17	85.37
KRH26709	Soybean	nucleus	83.97	84.17
TraesCS5A01G426100.1	Wheat	nucleus	84.45	83.85
TraesCS5B01G428000.1	Wheat	nucleus	84.45	83.85
TraesCS5D01G434100.1	Wheat	nucleus	84.45	83.85
HORVU5Hr1G103680.1	Barley	cytosol	83.97	83.37
CDX92386	Canola	nucleus	82.54	81.75
AT3G44110.1	Thale cress	nucleus	82.06	81.67
Bra002385.1-P	Field mustard	nucleus	82.3	81.52
CDX92385	Canola	nucleus	82.06	81.28
CDY65546	Canola	nucleus	81.82	81.24
Bra002386.1-P	Field mustard	nucleus	81.82	81.04
CDY09117	Canola	nucleus	80.86	79.91
Bra020169.1-P	Field mustard	nucleus	80.62	79.67
Solyc11g071830.1.1	Tomato	plastid	79.19	79.19
AT5G22060.1	Thale cress	cytosol	79.19	79.0
Zm00001d006666_P001	Maize	nucleus	55.02	78.5
Zm00001d048538_P001	Maize	nucleus	60.05	77.23
Bra006608.1-P	Field mustard	nucleus	75.12	76.96
CDX88812	Canola	nucleus	75.12	76.96
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	33.25	75.54
CDX70980	Canola	nucleus	72.97	74.94
Zm00001d006230_P001	Maize	cytosol	51.67	74.48
Zm00001d045645_P001	Maize	cytosol	47.13	74.06
CDY16617	Canola	nucleus	35.89	72.12
Solyc01g090550.2.1	Tomato	nucleus	72.73	71.7
HORVU6Hr1G065410.3	Barley	cytosol, mitochondrion	49.28	70.55
Zm00001d006563_P001	Maize	mitochondrion	44.98	69.12
Zm00001d026185_P001	Maize	endoplasmic reticulum	77.51	64.41
Zm00001d004840_P001	Maize	mitochondrion	51.67	62.97
Solyc05g050820.2.1	Tomato	cytosol	35.17	61.76
Solyc05g050810.2.1	Tomato	nucleus	32.06	52.14
Solyc01g079610.2.1	Tomato	nucleus	31.58	38.26
Solyc05g006820.2.1	Tomato	plastid	27.99	37.62
Solyc04g005820.2.1	Tomato	cytosol, nucleus	27.99	36.56
Solyc02g077670.2.1	Tomato	cytosol	29.43	35.86
Solyc06g071110.2.1	Tomato	nucleus	28.71	35.61
Solyc09g005350.2.1	Tomato	nucleus, plastid	28.95	35.59
Solyc07g053620.2.1	Tomato	nucleus	17.94	33.48
Solyc01g105340.2.1	Tomato	plastid	24.4	28.9
Solyc10g084300.1.1	Tomato	nucleus	17.22	27.27
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	16.99	26.01
Solyc11g044450.1.1	Tomato	nucleus	20.33	24.71
Solyc01g086740.2.1	Tomato	mitochondrion	25.36	23.93
Solyc03g116790.2.1	Tomato	plastid	26.55	22.29
Solyc01g081330.2.1	Tomato	plastid	22.49	21.66
Solyc03g118500.2.1	Tomato	plastid	26.55	20.86
Solyc06g060240.1.1	Tomato	cytosol	14.35	15.62

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4BPD2
HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc04g009770.2	EnsemblPlants:Solyc04g009770.2.1	UniParc:UPI0002765A13	SEG:seg

Description

No Description!

Coordinates

chr4:+:3081668..3086277

Molecular Weight (calculated)

46637.4 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.803

Length

418 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEILGV PNTASPDDLK KAYRKAAIKN HPDKGGDPEK FKEIAQAYEV LNDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GGGFGGGGSS RGRRQRRGED VVHPLKVSLE DLYNGISKKL SLSRNVLCSK CKGVGSKSGA SLKCPGCQGK GMKVSIRQLG PMIQQMQHPC NECRGTGEKI
201: NDKDRCPQCK GEKVVQEKKV LEVVVDKGMQ NGQKITFPGE ADEEPDTVTG DIVFILQQKE HPKFKRKGDD LFVEHTLTLT EALCGFQFVL THLDNRQLII
301: KSQPGEVVKP DQFKAINDEG MPMYQRPFMK GKLYIHFTVD FPNTLTPELC KNLEAVLPAR PKTQASDMEL DECEETTLHD VNIDEEMRRK QQQQAQEAYD
401: EDDDDMHGGA QRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.