Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007444 | Potato | cytosol | 95.31 | 98.39 |
| Solyc05g006820.2.1 | Tomato | plastid | 77.19 | 79.42 |
| KRH74747 | Soybean | cytosol | 55.62 | 64.26 |
| KRH69388 | Soybean | cytosol | 55.31 | 64.13 |
| CDY20944 | Canola | cytosol | 59.69 | 62.62 |
| KRG99186 | Soybean | cytosol | 55.94 | 61.94 |
| KRH45833 | Soybean | cytosol | 55.94 | 61.94 |
| Solyc06g071110.2.1 | Tomato | nucleus | 65.0 | 61.72 |
| VIT_01s0026g01450.t01 | Wine grape | cytosol | 51.88 | 60.81 |
| CDY45143 | Canola | cytoskeleton, cytosol, nucleus | 62.5 | 60.42 |
| AT1G59725.1 | Thale cress | cytoskeleton, cytosol, nucleus | 61.25 | 59.21 |
| CDY20637 | Canola | cytosol | 59.06 | 59.06 |
| CDY30900 | Canola | cytoskeleton, cytosol, nucleus | 62.19 | 59.05 |
| Bra027838.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 62.5 | 58.82 |
| CDY37986 | Canola | cytosol | 42.81 | 58.05 |
| AT1G10350.1 | Thale cress | cytosol | 61.88 | 56.73 |
| Bra018443.1-P | Field mustard | nucleus | 60.94 | 55.87 |
| Solyc09g005350.2.1 | Tomato | nucleus, plastid | 58.75 | 55.29 |
| Solyc02g077670.2.1 | Tomato | cytosol | 56.56 | 52.77 |
| KRH60063 | Soybean | endoplasmic reticulum, golgi | 32.19 | 52.02 |
| Solyc07g053620.2.1 | Tomato | nucleus | 31.56 | 45.09 |
| Solyc10g084300.1.1 | Tomato | nucleus | 36.25 | 43.94 |
| Solyc03g007650.1.1 | Tomato | cytosol, mitochondrion, nucleus | 35.94 | 42.12 |
| Solyc11g044450.1.1 | Tomato | nucleus | 34.69 | 32.27 |
| Solyc01g079610.2.1 | Tomato | nucleus | 34.38 | 31.88 |
| Solyc05g055160.2.1 | Tomato | nucleus | 37.19 | 28.4 |
| Solyc11g071830.1.1 | Tomato | plastid | 36.88 | 28.23 |
| Solyc04g009770.2.1 | Tomato | nucleus | 36.56 | 27.99 |
| Solyc11g006460.1.1 | Tomato | nucleus | 36.56 | 27.92 |
| Solyc01g090550.2.1 | Tomato | nucleus | 35.94 | 27.12 |
| Solyc01g105340.2.1 | Tomato | plastid | 27.19 | 24.65 |
| Solyc06g060240.1.1 | Tomato | cytosol | 29.06 | 24.22 |
| Solyc05g050810.2.1 | Tomato | nucleus | 18.44 | 22.96 |
| Solyc05g050820.2.1 | Tomato | cytosol | 16.88 | 22.69 |
| Solyc01g086740.2.1 | Tomato | mitochondrion | 25.31 | 18.28 |
| Solyc03g116790.2.1 | Tomato | plastid | 28.12 | 18.07 |
| Solyc01g081330.2.1 | Tomato | plastid | 22.19 | 16.36 |
| Solyc03g118500.2.1 | Tomato | plastid | 26.56 | 15.98 |
Protein Annotations
| Gene3D:1.10.287.110 | Gene3D:2.60.260.20 | MapMan:35.1 | InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | UniProt:K4BNI8 |
| PFAM:PF00226 | PFAM:PF01556 | PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR24078 |
| PANTHER:PTHR24078:SF175 | SMART:SM00271 | SUPFAM:SSF46565 | SUPFAM:SSF49493 | EnsemblPlantsGene:Solyc04g005820.2 | EnsemblPlants:Solyc04g005820.2.1 |
| UniParc:UPI00027665E3 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:524032..528627
Molecular Weight (calculated)
35783.6 Da
IEP (calculated)
9.822
GRAVY (calculated)
-0.752
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVDYYKTLK VSRNASEEDL KKSYKRLAMK WHPDKNSENK KEAEAKFKQI SEAYDVLSDP QKRQIYDIYG DEALKSGQFD PSSPSDRRGF KFNSRDAEDI
101: FAEFFGGSDG YSRSTGGTVR IRKAAPVENK LPCTLEELYK GSKRKMKISR IVLDGAGTLP SKSCPSSKPT TIEEVLAIHI KPGWKKGTKI TFPEKGNHES
201: GAAPGDLIFV IDEKPHDVFK RDGNDLVINQ KISLVDALAG KTINLTALDG RELTIPITDV VKPGHEQKIP NEGMPISKEP GKKGNLRIKF EVKFPSRLSS
301: DQKCDIRRVL GRTADYHGYT
101: FAEFFGGSDG YSRSTGGTVR IRKAAPVENK LPCTLEELYK GSKRKMKISR IVLDGAGTLP SKSCPSSKPT TIEEVLAIHI KPGWKKGTKI TFPEKGNHES
201: GAAPGDLIFV IDEKPHDVFK RDGNDLVINQ KISLVDALAG KTINLTALDG RELTIPITDV VKPGHEQKIP NEGMPISKEP GKKGNLRIKF EVKFPSRLSS
301: DQKCDIRRVL GRTADYHGYT
001: MGVDYYNVLK VNRNANEDDL KKSYRRMAMK WHPDKNPTSK KEAEAKFKQI SEAYDVLSDP QRRQIYDQYG EEGLKSTDLP TAAETAAHQQ QRSYSSSNSE
101: FRYYPRDAED IFAEFFGESG DAFGGGSSGR TRGDGGDGGG RRFKSAEAGS QANRKTPPTN KKTTPPANRK APAIESKLAC TLEELYKGAK KKMRISRVVP
201: DDFGKPKTVQ EILKIDIKPG WKKGTKITFP EKGNQEPGVT PADLIFVVDE KPHSVFKRDG NDLILEKKVS LIDALTGLTI SVTTLDGRSL TIPVLDIVKP
301: GQEIVIPNEG MPTKDPLKRG DLRVTFEILF PSRLTSEQKN DLKRVLGGS
101: FRYYPRDAED IFAEFFGESG DAFGGGSSGR TRGDGGDGGG RRFKSAEAGS QANRKTPPTN KKTTPPANRK APAIESKLAC TLEELYKGAK KKMRISRVVP
201: DDFGKPKTVQ EILKIDIKPG WKKGTKITFP EKGNQEPGVT PADLIFVVDE KPHSVFKRDG NDLILEKKVS LIDALTGLTI SVTTLDGRSL TIPVLDIVKP
301: GQEIVIPNEG MPTKDPLKRG DLRVTFEILF PSRLTSEQKN DLKRVLGGS
Arabidopsis Description
DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SY77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.