Factsheet for Solyc01g090550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066980	Potato	nucleus	94.34	95.24
GSMUA_Achr11P...	Banana	cytosol	69.81	77.69
GSMUA_Achr8P11020_001	Banana	nucleus	71.46	75.75
KRH66593	Soybean	endoplasmic reticulum	74.06	74.76
EES07516	Sorghum	nucleus	73.82	74.52
Solyc11g006460.1.1	Tomato	nucleus	73.58	74.46
KRH48754	Soybean	endoplasmic reticulum	73.58	74.29
Zm00001d017476_P001	Maize	plasma membrane	73.82	74.17
Solyc05g055160.2.1	Tomato	nucleus	72.88	73.75
Os02t0656500-01	Rice	nucleus	72.41	73.1
Os04t0549600-01	Rice	cytosol	71.7	73.08
VIT_15s0021g02090.t01	Wine grape	cytosol	76.18	72.91
Solyc04g009770.2.1	Tomato	nucleus	71.7	72.73
TraesCS6D01G232600.1	Wheat	nucleus	72.88	72.71
TraesCS6B01G274600.1	Wheat	nucleus	72.88	72.71
TraesCS6A01G250800.1	Wheat	nucleus	72.88	72.71
OQU82085	Sorghum	nucleus	70.75	71.77
Solyc05g050820.2.1	Tomato	cytosol	38.68	68.91
Solyc11g071830.1.1	Tomato	plastid	67.92	68.9
HORVU0Hr1G016360.1	Barley	cytosol	27.59	66.1
HORVU0Hr1G018300.1	Barley	plastid	73.58	64.46
Solyc05g050810.2.1	Tomato	nucleus	34.91	57.59
Solyc05g006820.2.1	Tomato	plastid	26.89	36.66
Solyc02g077670.2.1	Tomato	cytosol	29.25	36.15
Solyc01g079610.2.1	Tomato	nucleus	29.25	35.94
Solyc04g005820.2.1	Tomato	cytosol, nucleus	27.12	35.94
Solyc09g005350.2.1	Tomato	nucleus, plastid	28.77	35.88
Solyc07g053620.2.1	Tomato	nucleus	18.63	35.27
Solyc06g071110.2.1	Tomato	nucleus	25.24	31.75
Solyc01g105340.2.1	Tomato	plastid	23.58	28.33
Solyc10g084300.1.1	Tomato	nucleus	17.22	27.65
Solyc03g007650.1.1	Tomato	cytosol, mitochondrion, nucleus	17.22	26.74
Solyc01g086740.2.1	Tomato	mitochondrion	24.76	23.7
Solyc03g116790.2.1	Tomato	plastid	26.65	22.69
Solyc11g044450.1.1	Tomato	nucleus	18.4	22.67
Solyc03g118500.2.1	Tomato	plastid	26.65	21.24
Solyc01g081330.2.1	Tomato	plastid	20.28	19.82
Solyc06g060240.1.1	Tomato	cytosol	15.09	16.67

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4AYZ6
HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF11	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	EnsemblPlantsGene:Solyc01g090550.2	EnsemblPlants:Solyc01g090550.2.1	UniParc:UPI0002761F55	SEG:seg

Description

No Description!

Coordinates

chr1:+:84207017..84210949

Molecular Weight (calculated)

47261.8 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.765

Length

424 amino acids

Sequence
(BLAST)

001: MFGQAPRRSD NSKYYEVLGV SKSASQDELK KAYRKAAIRN HPDKGGDPEK FKELGQAYEV LIDPEKRDIY DQYGEDALKE GMGSGGGGGG GGVHNHFDIF
101: ESFFGGSFGG GGSHFRASRQ KRGEDVVHTL RVSLEDLYNG TTKKLSLSRS ILCPKCKGKG SKSGASGACY GCQGTGMRVT RRQIAPGMIQ QMQHVCPECR
201: GSGEVISDRD RCPQCKGNKV TQEKKVLEVN VEKGMEHNQK ITFEGEADQA PDTITGDIVF VLQQKEHPKF KRKFDDLYIE HTLTLTEALC GFQFVLTHLD
301: GRQLLIKSNP GEVIKPDHYK AINDEGMPNF GKPFIKGQLY IHFDVVFPES GVLSPDTCRS IETILSSKPG KSSSEMKLDE CEETIMHDVN IEEEMRRKEP
401: RQHQEAYDSD NDDPNLHRVA CNQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.