Factsheet for TraesCS6A01G250800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G232600.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G274600.1	Wheat	nucleus	100.0	100.0
HORVU0Hr1G016360.1	Barley	cytosol	40.47	97.18
Os02t0656500-01	Rice	nucleus	87.06	88.1
EES07516	Sorghum	nucleus	86.82	87.86
HORVU0Hr1G018300.1	Barley	plastid	98.12	86.16
Zm00001d017476_P001	Maize	plasma membrane	85.18	85.78
GSMUA_Achr11P...	Banana	cytosol	71.06	79.27
GSMUA_Achr8P11020_001	Banana	nucleus	73.41	78.0
PGSC0003DMT400066980	Potato	nucleus	73.65	74.52
TraesCS5A01G372900.1	Wheat	nucleus	73.65	74.35
TraesCS5A01G426100.1	Wheat	nucleus	72.94	73.63
Solyc01g090550.2.1	Tomato	nucleus	72.71	72.88
KRH66593	Soybean	endoplasmic reticulum	72.0	72.86
VIT_15s0021g02090.t01	Wine grape	cytosol	75.53	72.46
PGSC0003DMT400018083	Potato	nucleus	71.29	72.31
KRH48754	Soybean	endoplasmic reticulum	71.29	72.14
Solyc05g050820.2.1	Tomato	cytosol	35.06	62.6
Solyc05g050810.2.1	Tomato	nucleus	30.12	49.81
TraesCS1A01G099300.1	Wheat	nucleus	29.88	36.29
TraesCS3A01G161200.1	Wheat	nucleus	28.0	34.49
TraesCS1A01G070300.1	Wheat	cytosol	27.06	33.92
TraesCS3A01G520100.1	Wheat	cytosol	20.94	33.33
TraesCS7A01G298000.1	Wheat	cytosol	26.35	32.37
TraesCS1A01G395300.1	Wheat	cytosol	27.29	31.18
TraesCS6A01G087000.1	Wheat	cytosol	24.24	30.56
TraesCS1A01G267600.1	Wheat	cytosol	19.76	25.69
TraesCS5A01G115000.1	Wheat	plastid	24.94	25.54
TraesCS3A01G386400.1	Wheat	cytosol	18.59	24.69
TraesCS5A01G117600.1	Wheat	plastid	23.76	23.99
TraesCS7A01G051000.1	Wheat	mitochondrion	24.24	23.46
TraesCS6A01G372700.1	Wheat	plastid	26.59	23.16
TraesCS4A01G064300.2	Wheat	plastid	26.59	20.93
TraesCS7A01G176600.1	Wheat	mitochondrion	23.06	20.59
TraesCS6A01G421300.1	Wheat	cytosol	8.47	17.06

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF1	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
EnsemblPlantsGene:TraesCS6A01G250800	EnsemblPlants:TraesCS6A01G250800.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr6A:+:465227251..465230458

Molecular Weight (calculated)

47049.9 Da

IEP (calculated)

7.093

GRAVY (calculated)

-0.797

Length

425 amino acids

Sequence
(BLAST)

001: MFGRMPRKTS NNTKYYEVLG VSKTATPDEL KKAYRKAAIK NHPDKGGDPE KFKELAQAYD VLNDPEKREI YDQYGEDAIK EGMGGSGGAD MHSPFDIFEQ
101: LFGGGGGGFG GGSSRGRRQK RGEDVVHTMK VSLEDLYNGA TKKLSLSRNV LCGKCKGKGS KSGATATCSG CRGAGMRMIT RQIGPGMIQQ MNTVCPECRG
201: SGEMINDKDR CPSCRGNKVS QEKKVLEVHV EKGMQHGQKI VFQGEADEAP DTVTGDIVFV LQLKEHPKFK RKSDDLFVEH TISLTEALCG FQFVLTHLDG
301: RQLLIKSNPG EIIKPGQHKA INDEGMPQHG RPFMKGRLFV EFSVEFPEPG VLTPSQCKSL EKILPPRPGS QSSDMDVDQC EETTMHDVNI EEEMRRRQHQ
401: RRQEAYDEED DDEGGAPRGV QCAQQ

Best Arabidopsis Sequence Match ( AT1G80030.1 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.