Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G073040.2 | Barley | cytosol | 73.93 | 67.24 |
| TraesCS3A01G386400.1 | Wheat | cytosol | 83.89 | 55.31 |
| TraesCS3B01G418500.1 | Wheat | cytosol | 84.36 | 54.77 |
| TraesCS3D01G379400.1 | Wheat | cytosol | 83.89 | 54.46 |
| HORVU3Hr1G081940.1 | Barley | cytosol | 81.04 | 52.78 |
| EES01846 | Sorghum | cytosol | 71.09 | 45.59 |
| Os01t0875700-01 | Rice | cytosol | 69.19 | 44.65 |
| Zm00001d012242_P001 | Maize | cytosol | 65.88 | 43.99 |
| TraesCS1A01G267600.1 | Wheat | cytosol | 54.5 | 35.17 |
| Zm00001d042653_P001 | Maize | plastid | 66.35 | 35.0 |
| GSMUA_Achr7P03030_001 | Banana | cytosol | 43.6 | 28.93 |
| TraesCS3A01G520100.1 | Wheat | cytosol | 23.7 | 18.73 |
| TraesCS6A01G087000.1 | Wheat | cytosol | 27.96 | 17.51 |
| Solyc11g044450.1.1 | Tomato | nucleus | 27.01 | 16.57 |
| PGSC0003DMT400062759 | Potato | cytosol | 27.01 | 16.43 |
| TraesCS1A01G395300.1 | Wheat | cytosol | 28.44 | 16.13 |
| TraesCS7A01G298000.1 | Wheat | cytosol | 25.12 | 15.32 |
| TraesCS3A01G161200.1 | Wheat | nucleus | 24.17 | 14.78 |
| GSMUA_Achr8P32540_001 | Banana | mitochondrion | 18.48 | 14.03 |
| KRH44054 | Soybean | cytosol | 24.17 | 13.28 |
| KRH64663 | Soybean | plastid | 22.27 | 13.28 |
| TraesCS1A01G070300.1 | Wheat | cytosol | 21.33 | 13.27 |
| KRH10414 | Soybean | cytosol | 23.7 | 13.12 |
| AT1G44160.1 | Thale cress | mitochondrion | 20.38 | 12.04 |
| CDY20977 | Canola | nucleus | 22.27 | 11.66 |
| CDY66166 | Canola | plastid | 18.96 | 11.49 |
| CDY14974 | Canola | nucleus | 18.48 | 11.27 |
| Bra018413.1-P | Field mustard | nucleus | 21.33 | 11.19 |
| Bra036942.1-P | Field mustard | nucleus | 18.48 | 11.17 |
| Bra032204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 18.96 | 11.05 |
| CDY20589 | Canola | nucleus | 20.38 | 10.94 |
| PGSC0003DMT400045241 | Potato | extracellular, mitochondrion | 18.96 | 10.39 |
| AT1G11040.1 | Thale cress | cytosol, nucleus, plastid | 21.33 | 10.27 |
| CDX97927 | Canola | nucleus | 20.85 | 10.16 |
| Solyc06g060240.1.1 | Tomato | cytosol | 18.48 | 10.16 |
| CDY67277 | Canola | cytosol, nucleus, plastid | 20.85 | 10.11 |
| Bra019886.1-P | Field mustard | nucleus | 20.38 | 9.93 |
| VIT_12s0034g02190.t01 | Wine grape | nucleus | 16.11 | 9.91 |
| TraesCS5A01G426100.1 | Wheat | nucleus | 19.43 | 9.74 |
| TraesCS1A01G099300.1 | Wheat | nucleus | 15.64 | 9.43 |
| TraesCS5A01G372900.1 | Wheat | nucleus | 18.01 | 9.03 |
| TraesCS6A01G250800.1 | Wheat | nucleus | 17.06 | 8.47 |
| TraesCS5A01G115000.1 | Wheat | plastid | 16.59 | 8.43 |
| TraesCS7A01G051000.1 | Wheat | mitochondrion | 15.64 | 7.52 |
| TraesCS6A01G372700.1 | Wheat | plastid | 17.06 | 7.38 |
| TraesCS5A01G117600.1 | Wheat | plastid | 14.69 | 7.36 |
| TraesCS4A01G064300.2 | Wheat | plastid | 17.54 | 6.85 |
| TraesCS7A01G176600.1 | Wheat | mitochondrion | 14.22 | 6.3 |
| KRG90292 | Soybean | cytosol, nucleus, plastid | 7.11 | 5.24 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G421300.1 | EnsemblPlantsGene:TraesCS6A01G421300 | Gene3D:1.10.287.110 | Gene3D:2.60.260.20 | InterPro:DnaJ_domain | InterPro:IPR001623 |
| InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF517 | PFAM:PF00226 | PFscan:PS50076 |
| PRINTS:PR00625 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 | TIGR:cd06257 | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:617759979..617761006
Molecular Weight (calculated)
23527.2 Da
IEP (calculated)
10.361
GRAVY (calculated)
-0.609
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNPPELYHR ILDVPRGTSS QGLRAAYKGL ARKWHPDKHP PTSKPEAEAC FKAITEAYKA LLDQQENRAV FGACNDDRAA KMFGTFGAGC GRAGARMARS
101: RSDDFCMRSA PATPAREFTK VYSSGNTGGR RAFAEFSSSI MRKAPPLERA LECMLEELCR GCKKQVEFTR DVVTKNEYCH SLAASFFLHR LKPRLNSSRK
201: RNINSRGTGL M
101: RSDDFCMRSA PATPAREFTK VYSSGNTGGR RAFAEFSSSI MRKAPPLERA LECMLEELCR GCKKQVEFTR DVVTKNEYCH SLAASFFLHR LKPRLNSSRK
201: RNINSRGTGL M
001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
Arabidopsis Description
At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.