Factsheet for PGSC0003DMT400045241

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685
extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060240.1.1	Tomato	cytosol	93.51	93.75
Os05t0427900-01	Rice	cytosol	19.22	46.84
KRH64663	Soybean	plastid	39.22	42.66
PGSC0003DMT400062759	Potato	cytosol	35.84	39.77
CDY14974	Canola	nucleus	31.69	35.26
Bra036942.1-P	Field mustard	nucleus	31.95	35.24
CDY66166	Canola	plastid	31.69	35.06
Bra018413.1-P	Field mustard	nucleus	36.36	34.83
GSMUA_Achr7P03030_001	Banana	cytosol	28.57	34.59
Os01t0875700-01	Rice	cytosol	29.35	34.56
CDY20977	Canola	nucleus	36.1	34.49
AT1G44160.1	Thale cress	mitochondrion	31.95	34.45
CDY20589	Canola	nucleus	35.06	34.35
EES01846	Sorghum	cytosol	28.83	33.74
HORVU3Hr1G081940.1	Barley	cytosol	28.31	33.64
TraesCS3D01G379400.1	Wheat	cytosol	28.05	33.23
TraesCS3A01G386400.1	Wheat	cytosol	27.53	33.12
GSMUA_Achr8P32540_001	Banana	mitochondrion	23.64	32.73
TraesCS3B01G418500.1	Wheat	cytosol	27.53	32.62
Bra032204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	30.65	32.6
TraesCS1B01G278300.1	Wheat	cytosol	27.53	32.42
CDX97927	Canola	nucleus	36.36	32.33
CDY67277	Canola	cytosol, nucleus, plastid	36.36	32.18
TraesCS1A01G267600.1	Wheat	cytosol	27.27	32.11
Bra019886.1-P	Field mustard	nucleus	36.1	32.1
TraesCS1D01G267500.1	Wheat	cytosol	27.53	32.02
AT1G11040.1	Thale cress	cytosol, nucleus, plastid	35.84	31.51
Zm00001d012242_P001	Maize	cytosol	25.71	31.33
Zm00001d038250_P001	Maize	cytosol	26.49	30.45
EES19566	Sorghum	cytosol	26.75	30.29
PGSC0003DMT400007444	Potato	cytosol	24.16	30.0
PGSC0003DMT400083824	Potato	cytosol	25.19	29.94
PGSC0003DMT400045398	Potato	mitochondrion	24.16	29.9
PGSC0003DMT400059397	Potato	cytosol	25.19	28.53
PGSC0003DMT400081223	Potato	cytosol	25.19	28.45
PGSC0003DMT400083040	Potato	cytosol	23.9	27.3
Zm00001d042653_P001	Maize	plastid	28.05	27.0
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	22.86	25.73
HORVU0Hr1G000620.4	Barley	plastid	22.08	21.52
TraesCS6A01G421300.1	Wheat	cytosol	10.39	18.96
HORVU7Hr1G073040.2	Barley	cytosol	9.87	16.38
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	14.03	15.65
PGSC0003DMT400060145	Potato	cytosol	15.84	14.56
PGSC0003DMT400018083	Potato	nucleus	15.84	14.56
PGSC0003DMT400066980	Potato	nucleus	15.84	14.52
PGSC0003DMT400007728	Potato	nucleus	15.32	14.08
PGSC0003DMT400005019	Potato	cytosol	15.06	13.84
PGSC0003DMT400065401	Potato	nucleus	14.29	13.13
PGSC0003DMT400064990	Potato	mitochondrion	11.69	10.16
PGSC0003DMT400032760	Potato	plastid	11.69	10.11
PGSC0003DMT400036786	Potato	plastid	11.43	8.27

Protein Annotations

EnsemblPlants:PGSC0003DMT400045241	EnsemblPlantsGene:PGSC0003DMG400017553	EntrezGene:102590738	Gene3D:2.60.260.20	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:DnaJ_C
InterPro:HSP40/DnaJ_pept-bd	PANTHER:PTHR24078	PANTHER:PTHR24078:SF522	PFAM:PF01556	PGSC:PGSC0003DMG400017553	RefSeq:XP_006363886.1
SEG:seg	SUPFAM:SSF49493	UniParc:UPI000294A9AA	UniProt:M1BHC4	MapMan:35.1	:

Description

Protein psi1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017553]

Coordinates

chr6:+:43108400..43110764

Molecular Weight (calculated)

41791.6 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.474

Length

385 amino acids

Sequence
(BLAST)

001: MADHSRATSH EFCGSFGFGS VCKVCKSFVS ILSPKKTHHK PKSNILQDNH HKVSVKKSSV DEDIDDDEQF TYKLNEGLNR KHQSNEQYYY TSSPKSSPPH
101: SRSTSPSRLS RTISRIFRAT SVKNHNHNGG GGGGPALAST LSRNASSHVD LTSHHAASKS FSRSVSLRNG GAEAPAPAAS TTLPASFSRN ASRKSSTPIM
201: FSSSTGLVKP PPTEKTLECT LDELCFGCVK KMKVTMTDNG LTEEEEVLTI KVKPGWTKGT KITFEGKGNE RPGTSAADVI FVIAEKKHPL FMRDGDNVEL
301: AVEIPLVKAL TGCTISIPLL GGEKMSLTID DIICPGYEKI IEGQGMPKPK EEGNRGNLIV TFLVAFPTEI AEEQRSDIVR ILQDC

Best Arabidopsis Sequence Match ( AT1G11040.1 )
(BLAST)

001: MGTPRSPATD FFGISKTACK AYKSLVTKLH PLSSHRKSES HSDADSAIHR RYLEEKFAEE DDLIAARRGL RLQSMDDSSV FKRRSSLLSN SSSRRSHTPQ
101: ARPTYLSSSA SSNRRSAFSR STSRRDEGSS HSGVRSHGLK SRPISNNTSP MTSPFTSPRG KDQTLGDLFG SVKKLSSPTS NSPINGVKQS SPSSISKSAS
201: KRDKDERGST SSATSTSLPY SKSKSTRDTA GSIAKSISRR STTPIVFSQS TPPKKPPAVE KKLECTLEEL CHGGVKNIKI KRDIITDEGL IMQQEEMLRV
301: NIQPGWKKGT KITFEGVGNE KPGYLPEDIT FVVEEKRHPL FKRRGDDLEI AVEIPLLKAL TGCKLSVPLL SGESMSITVG DVIFHGFEKA IKGQGMPNAK
401: EEGKRGDLRI TFLVNFPEKL SEEQRSMAYE VLKDCSWA

Arabidopsis Description

DNAJ chaperone C-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:O04087]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.