Factsheet for PGSC0003DMT400024267

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053620.2.1	Tomato	nucleus	60.53	92.41
GSMUA_Achr3P15480_001	Banana	cytosol	63.45	74.32
PGSC0003DMT400081223	Potato	cytosol	73.39	73.61
Zm00001d009556_P001	Maize	cytoskeleton, cytosol, nucleus	73.98	72.08
PGSC0003DMT400059397	Potato	cytosol	71.64	72.06
Os05t0562300-01	Rice	nucleus	75.73	71.55
TraesCS1D01G403500.1	Wheat	cytosol	74.56	70.64
Zm00001d039000_P001	Maize	mitochondrion	74.27	70.17
EES19943	Sorghum	cytosol	74.27	70.17
HORVU1Hr1G087070.1	Barley	cytosol	74.85	69.38
TraesCS1A01G395300.1	Wheat	cytosol	74.85	68.82
TraesCS1B01G423600.1	Wheat	cytosol	74.85	67.72
PGSC0003DMT400083824	Potato	cytosol	57.31	60.49
PGSC0003DMT400083040	Potato	cytosol	58.19	59.05
PGSC0003DMT400007444	Potato	cytosol	52.92	58.39
PGSC0003DMT400045398	Potato	mitochondrion	52.92	58.2
GSMUA_Achr6P13820_001	Banana	cytosol	25.44	50.88
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	33.92	33.62
PGSC0003DMT400062759	Potato	cytosol	31.87	31.41
PGSC0003DMT400007728	Potato	nucleus	36.26	29.59
PGSC0003DMT400018083	Potato	nucleus	35.96	29.36
PGSC0003DMT400060145	Potato	cytosol	35.67	29.12
PGSC0003DMT400066980	Potato	nucleus	35.67	29.05
PGSC0003DMT400065401	Potato	nucleus	35.09	28.64
PGSC0003DMT400005019	Potato	cytosol	35.09	28.64
PGSC0003DMT400032760	Potato	plastid	30.7	23.6
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	25.73	22.86
PGSC0003DMT400064990	Potato	mitochondrion	25.44	19.64
PGSC0003DMT400036786	Potato	plastid	27.49	17.67

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102587495	MapMan:19.1.5.2	Gene3D:2.20.25.170	Gene3D:2.60.260.20	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	UniProt:M1AJS3	PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400009379	PGSC:PGSC0003DMG400009379
EnsemblPlants:PGSC0003DMT400024267	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF298
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI000295A941	RefSeq:XP_006348828.1	SEG:seg

Description

DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400009379]

Coordinates

chr7:+:49711664..49714817

Molecular Weight (calculated)

37275.4 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.580

Length

342 amino acids

Sequence
(BLAST)

001: MGVDYYKVLG VDKNATDDDL KKAYRKLAMK WHPDKNPQNK KEAEAKFKQI SEAYDVLSDS QKKAVYDQYG EEGLKGGVPP PGAGGPGAGS TYFSTGDGPT
101: SFRFNSRNAD DIFAEFFGFS TPYGPGGGRG SRFGNMFTDD IFAASFAEGG GGGGVPMHPS VPRKEAPVQQ NLPCNLEDLY KGTTKKMKIS REIADSSGKR
201: IVQEILTIEI KPGWKKGTKI TFQEKGNEQP GVIPADLVFI IDEKPHKVFS RDGNDLIVSQ KISLAEALTG TTVHLTTLDG RNLTIPINNV IQPNYEHVVQ
301: GEGMPLPKDP SKKGNLRIKF DIKFPARLTM AQKSGIKELL GS

Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)

001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG

Arabidopsis Description

At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.