Factsheet for PGSC0003DMT400083824

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	68.83	74.58
KRH52529	Soybean	cytosol	75.0	74.54
Bra020505.1-P	Field mustard	cytosol	75.31	73.27
CDY05498	Canola	cytosol	75.31	73.27
CDY54902	Canola	cytosol	75.31	73.27
VIT_04s0008g04300.t01	Wine grape	cytosol	75.62	72.27
CDX88188	Canola	cytosol	70.37	71.03
Bra009848.1-P	Field mustard	cytosol	69.14	70.89
CDX80523	Canola	cytosol	70.06	70.72
KRH61858	Soybean	cytosol	30.86	70.42
AT5G25530.1	Thale cress	cytosol	75.0	70.03
KRH61857	Soybean	cytosol, nucleus	24.69	68.97
EES14600	Sorghum	cytosol	67.28	63.56
Os08t0161900-01	Rice	cytosol	66.67	63.16
Zm00001d024527_P001	Maize	cytosol	67.59	62.93
TraesCS7B01G188900.2	Wheat	cytosol	66.67	62.43
TraesCS7A01G298000.1	Wheat	cytosol	66.67	62.43
TraesCS7D01G293900.1	Wheat	cytosol	66.67	62.43
HORVU7Hr1G070170.1	Barley	cytosol	66.67	62.43
GSMUA_Achr4P12330_001	Banana	nucleus	62.96	62.2
GSMUA_Achr9P23300_001	Banana	cytosol	63.89	60.17
PGSC0003DMT400059397	Potato	cytosol	60.8	57.94
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	60.49	57.31
TraesCS3A01G520100.1	Wheat	cytosol	47.22	57.3
PGSC0003DMT400081223	Potato	cytosol	60.19	57.18
PGSC0003DMT400045398	Potato	mitochondrion	54.32	56.59
PGSC0003DMT400007444	Potato	cytosol	53.7	56.13
TraesCSU01G059600.1	Wheat	cytosol	55.25	56.11
Zm00001d032347_P001	Maize	cytosol	58.64	55.72
TraesCS3B01G587800.1	Wheat	cytosol	55.25	55.42
EES13688	Sorghum	cytosol	60.49	55.21
PGSC0003DMT400083040	Potato	cytosol	57.41	55.19
GSMUA_AchrUn_...	Banana	cytosol	54.94	55.11
Os02t0128400-01	Rice	cytosol	54.01	51.62
KXG29372	Sorghum	cytosol	52.16	50.0
TraesCS6B01G115000.1	Wheat	cytosol	50.93	48.96
HORVU6Hr1G016170.1	Barley	cytosol	50.62	48.66
TraesCSU01G019500.1	Wheat	nucleus	50.62	48.66
TraesCS6A01G087000.1	Wheat	cytosol	50.62	48.66
HORVU6Hr1G016080.3	Barley	cytosol	50.62	47.95
HORVU3Hr1G113710.2	Barley	plastid	45.99	43.95
Os08t0374400-00	Rice	plastid	51.54	42.93
Zm00001d053972_P001	Maize	cytosol, golgi, plasma membrane	51.54	39.39
PGSC0003DMT400062759	Potato	cytosol	34.57	32.28
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	32.41	30.43
PGSC0003DMT400060145	Potato	cytosol	38.89	30.07
PGSC0003DMT400007728	Potato	nucleus	38.58	29.83
PGSC0003DMT400005019	Potato	cytosol	37.96	29.36
PGSC0003DMT400065401	Potato	nucleus	37.65	29.12
PGSC0003DMT400066980	Potato	nucleus	36.73	28.33
PGSC0003DMT400018083	Potato	nucleus	36.11	27.92
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	29.94	25.19
PGSC0003DMT400032760	Potato	plastid	31.48	22.92
PGSC0003DMT400036786	Potato	plastid	31.79	19.36
PGSC0003DMT400064990	Potato	mitochondrion	25.0	18.28

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1D772
PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400033618	PGSC:PGSC0003DMG400033618	EnsemblPlants:PGSC0003DMT400083824	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF435	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	UniParc:UPI00029537B9	SEG:seg	:	:	:

Description

Heat shock protein 40 [Source:PGSC_GENE;Acc:PGSC0003DMG400033618]

Coordinates

chr8:+:42321838..42324061

Molecular Weight (calculated)

35673.3 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.615

Length

324 amino acids

Sequence
(BLAST)

001: MGVDYYNVLN VGKTATEDDL KKAYRKLAMK WHPDKNPNNK KEAEAQFKEI SEAYEILSDP DKRQVFDQYG EEGLKEMPSP GCSNNPRNAE DIFAEFFGSS
101: PFGFGSAGVK STRFSSEGSG FAGFGGSDNI FRPASDGTGA NMPKKPPPVE SKLPCSLEEL YSGSTRKMKI SRTVVDTNGR LVTESEILTI DVKPGWKKGT
201: KITFPDKGNE QLNQLPADLV FVIDEKSHDV YKRDGNDLMR DYKVTLAEAL GGTTVKLTTL DGRALTIPVN EIVKPGYELV LAEEGMPITK EPGNRGVLKI
301: KFDVKFPTRL TTDQRTALKR ALGG

Best Arabidopsis Sequence Match ( AT5G25530.2 )
(BLAST)

001: MGLDYYDILK VNRNATEDDL KKSYRKLAMK WHPDKNPNTK TEAEAKFKQI SEAYEVLSDP QKRAVYDQYG EEGLSDMPPP GSTGNNGRAG GFNPRNAEDI
101: FAEFFGSSPF GFGSAGGPGR SMRFQSDGGG GMFGGFGGGN NGSENNIFRT YSEGTPAPKK PPPVESKLPC SLEELYSGST RKMKISRSIV DANGRQAQET
201: EILTIVVKPG WKKGTKIKFP DKGNEQVNQL PADLVFVIDE KPHDLFTRDG NDLITSRRVT LAEAIGGTTV NINTLDGRNL PVGVAEIVSP GYEFVVPGEG
301: MPIAKEPRNK GDLKIKFDVQ FPARLTTEQK SALKRVLAG

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:F4JY55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.