Factsheet for PGSC0003DMT400036786

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118500.2.1	Tomato	plastid	95.49	95.49
VIT_17s0000g02030.t01	Wine grape	plastid	53.95	59.67
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	46.05	53.49
KRH48662	Soybean	nucleus, plastid	52.44	53.14
CDX95817	Canola	plastid	48.12	50.89
CDX92166	Canola	plastid	47.37	49.9
AT3G17830.1	Thale cress	plastid	47.37	48.74
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	48.87	47.71
TraesCS4B01G241700.1	Wheat	plastid	42.67	42.43
TraesCS4A01G064300.2	Wheat	plastid	42.67	42.04
TraesCS4D01G241300.2	Wheat	plastid	42.29	41.67
OQU92981	Sorghum	plastid	42.11	41.56
Zm00001d028256_P002	Maize	plastid	41.54	41.08
HORVU4Hr1G066920.5	Barley	mitochondrion	42.67	39.96
PGSC0003DMT400032760	Potato	plastid	33.08	39.55
PGSC0003DMT400083824	Potato	cytosol	19.36	31.79
PGSC0003DMT400064990	Potato	mitochondrion	24.44	29.35
PGSC0003DMT400081223	Potato	cytosol	18.61	29.03
PGSC0003DMT400007728	Potato	nucleus	22.74	28.88
PGSC0003DMT400060145	Potato	cytosol	21.99	27.92
PGSC0003DMT400007444	Potato	cytosol	16.17	27.74
PGSC0003DMT400045398	Potato	mitochondrion	16.17	27.65
PGSC0003DMT400059397	Potato	cytosol	17.67	27.65
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	17.67	27.49
PGSC0003DMT400018083	Potato	nucleus	21.43	27.21
PGSC0003DMT400066980	Potato	nucleus	21.43	27.14
PGSC0003DMT400005019	Potato	cytosol	21.24	26.97
PGSC0003DMT400065401	Potato	nucleus	20.68	26.25
PGSC0003DMT400083040	Potato	cytosol	16.35	25.82
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	16.54	25.51
PGSC0003DMT400062759	Potato	cytosol	12.03	18.44
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	8.27	11.43

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102588524	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1B483	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG401014186	PGSC:PGSC0003DMG401014186	EnsemblPlants:PGSC0003DMT400036786	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096	PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	TMHMM:TMhelix	UniParc:UPI000296B738	RefSeq:XP_006341502.1	SEG:seg

Description

Chaperone protein DNAj [Source:PGSC_GENE;Acc:PGSC0003DMG401014186]

Coordinates

chr3:+:58000739..58007097

Molecular Weight (calculated)

58244.6 Da

IEP (calculated)

9.597

GRAVY (calculated)

-0.365

Length

532 amino acids

Sequence
(BLAST)

001: MPAIHNHNWF HTASNINTNC SFSTFSFPKT LTFSNSLSHS LKFVSPNPFF VNRKRRGFVT INAAAKSSSS DLYSVLNVSR NATLQEIKAS YRKLARKYHP
101: DMNKGPGAEE KFKEISAAYE VLSDDEKRSS YDHFGEAGLR GEYNVPGGGP QGVDPFEVFS EYFGESSAFF GGSGGLGGFN FDFKNTGRQN LDIRYDLDLS
201: FEESIFGGQR DIEVPCLDEC DSCDGTGAKS SRCVKVCSDC GGRGGVVKTQ KTPFGIMSQV STCLKCGGNG KIITDHCRKC GGRGQVQSKR SIKVVVPPGV
301: HDGATMQVRG EGNIDKKSSM SGDLYLVIHV EEKRGIWRDG LNLYSKLDVD FTEAILGTVK KVTTVDGTKN LQIPPGCQPG EKIKMSKMGV PDMNRSSVRG
401: DHIFLINVQI PKNLSDTERT LVEKLASLRA TSNHHSVSSG GERGGAARLW KPIKDFLRSG LSGRKFASIS SETTALRSLN RPLPSFPLIT SLSAVLLGTC
501: LLAFVKVCYS KILLQKRLVK PNFVLHKEIK EQ

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.