Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022249.1-P | Field mustard | cytosol, mitochondrion, plastid | 74.85 | 84.5 |
| CDX95817 | Canola | plastid | 81.62 | 83.9 |
| CDX92166 | Canola | plastid | 81.04 | 82.97 |
| VIT_17s0000g02030.t01 | Wine grape | plastid | 50.68 | 54.47 |
| KRH48662 | Soybean | nucleus, plastid | 52.03 | 51.24 |
| PGSC0003DMT400036786 | Potato | plastid | 48.74 | 47.37 |
| Solyc03g118500.2.1 | Tomato | plastid | 48.36 | 46.99 |
| GSMUA_Achr9P29030_001 | Banana | mitochondrion, plastid | 47.78 | 45.32 |
| TraesCS4B01G241700.1 | Wheat | plastid | 43.91 | 42.43 |
| TraesCS4D01G241300.2 | Wheat | plastid | 42.75 | 40.93 |
| OQU92981 | Sorghum | plastid | 42.36 | 40.63 |
| Zm00001d028256_P002 | Maize | plastid | 42.17 | 40.52 |
| TraesCS4A01G064300.2 | Wheat | plastid | 42.17 | 40.37 |
| AT2G22360.1 | Thale cress | plastid | 34.24 | 40.05 |
| AT4G39960.1 | Thale cress | mitochondrion, plastid | 34.62 | 40.04 |
| HORVU4Hr1G066920.5 | Barley | mitochondrion | 43.33 | 39.44 |
| AT1G80030.2 | Thale cress | plastid | 36.94 | 38.2 |
| AT1G28210.2 | Thale cress | mitochondrion | 23.79 | 28.81 |
| AT1G59725.1 | Thale cress | cytoskeleton, cytosol, nucleus | 18.18 | 28.4 |
| AT5G25530.1 | Thale cress | cytosol | 18.96 | 28.24 |
| AT2G20560.1 | Thale cress | cytosol | 18.38 | 28.19 |
| AT5G01390.1 | Thale cress | cytosol | 17.99 | 27.76 |
| AT5G48030.1 | Thale cress | mitochondrion | 24.37 | 27.63 |
| AT4G28480.1 | Thale cress | cytoskeleton, cytosol, nucleus | 18.38 | 27.3 |
| AT3G08910.1 | Thale cress | nucleus | 17.02 | 27.24 |
| AT1G10350.1 | Thale cress | cytosol | 18.38 | 27.22 |
| AT5G22060.1 | Thale cress | cytosol | 19.92 | 24.58 |
| AT3G62600.1 | Thale cress | endoplasmic reticulum, golgi | 16.44 | 24.57 |
| AT3G47940.1 | Thale cress | cytosol | 16.44 | 24.29 |
| AT3G44110.1 | Thale cress | nucleus | 19.54 | 24.05 |
| AT2G20550.2 | Thale cress | cytosol | 9.09 | 16.55 |
| AT1G44160.1 | Thale cress | mitochondrion | 10.64 | 15.41 |
| AT1G11040.1 | Thale cress | cytosol, nucleus, plastid | 10.83 | 12.79 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:19.1.4.2 | Gene3D:2.10.230.10 | Gene3D:2.60.260.20 | EntrezGene:821051 | ProteinID:AEE76012.1 |
| ArrayExpress:AT3G17830 | EnsemblPlantsGene:AT3G17830 | RefSeq:AT3G17830 | TAIR:AT3G17830 | RefSeq:AT3G17830-TAIR-G | EnsemblPlants:AT3G17830.1 |
| TAIR:AT3G17830.1 | EMBL:BT029219 | InterPro:DnaJ | InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009408 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0031072 | GO:GO:0046872 | GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:HSP_DnaJ_Cys-rich_dom |
| InterPro:HSP_DnaJ_Cys-rich_dom_sf | InterPro:IPR001305 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | HAMAP:MF_01152 |
| RefSeq:NP_188410.2 | PFAM:PF00226 | PFAM:PF00684 | PFAM:PF01556 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 |
| PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PFscan:PS51188 | PANTHER:PTHR43096 | PANTHER:PTHR43096:SF26 |
| UniProt:Q058J9 | SMART:SM00271 | SUPFAM:SSF46565 | SUPFAM:SSF49493 | SUPFAM:SSF57938 | TIGRFAMs:TIGR02349 |
| TMHMM:TMhelix | UniParc:UPI000034EF48 | SEG:seg | : | : | : |
Description
At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
Coordinates
chr3:+:6101753..6104805
Molecular Weight (calculated)
57262.4 Da
IEP (calculated)
9.959
GRAVY (calculated)
-0.576
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.