Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65077 | Canola | cytosol | 94.07 | 94.35 |
| CDY13869 | Canola | cytosol | 93.77 | 93.49 |
| Bra031127.1-P | Field mustard | cytosol | 93.77 | 93.49 |
| AT4G28480.1 | Thale cress | cytoskeleton, cytosol, nucleus | 86.94 | 84.2 |
| KRH25647 | Soybean | nucleus | 83.09 | 80.23 |
| KRH55895 | Soybean | endoplasmic reticulum, nucleus | 83.38 | 79.83 |
| KRH10937 | Soybean | cytosol | 76.56 | 76.11 |
| Solyc02g077670.2.1 | Tomato | cytosol | 77.45 | 76.09 |
| PGSC0003DMT400081223 | Potato | cytosol | 76.56 | 75.66 |
| KRH21363 | Soybean | cytosol | 66.77 | 73.05 |
| KRH12423 | Soybean | cytoskeleton, cytosol, nucleus | 56.68 | 72.62 |
| AT3G08910.1 | Thale cress | nucleus | 66.77 | 69.66 |
| AT5G01390.1 | Thale cress | cytosol | 66.47 | 66.87 |
| AT2G20550.2 | Thale cress | cytosol | 56.08 | 66.55 |
| KRH10940 | Soybean | cytosol | 63.8 | 63.99 |
| KRH21362 | Soybean | cytosol | 63.8 | 63.24 |
| AT1G59725.1 | Thale cress | cytoskeleton, cytosol, nucleus | 58.16 | 59.21 |
| AT5G25530.1 | Thale cress | cytosol | 59.05 | 57.35 |
| AT1G10350.1 | Thale cress | cytosol | 58.46 | 56.45 |
| AT3G47940.1 | Thale cress | cytosol | 55.49 | 53.43 |
| KRH40259 | Soybean | cytosol | 24.63 | 52.2 |
| AT3G62600.1 | Thale cress | endoplasmic reticulum, golgi | 33.23 | 32.37 |
| AT5G22060.1 | Thale cress | cytosol | 35.91 | 28.88 |
| AT1G44160.1 | Thale cress | mitochondrion | 30.56 | 28.85 |
| AT3G44110.1 | Thale cress | nucleus | 35.61 | 28.57 |
| AT1G11040.1 | Thale cress | cytosol, nucleus, plastid | 29.97 | 23.06 |
| AT2G22360.1 | Thale cress | plastid | 29.67 | 22.62 |
| AT4G39960.1 | Thale cress | mitochondrion, plastid | 29.97 | 22.6 |
| AT1G80030.2 | Thale cress | plastid | 29.67 | 20.0 |
| AT5G48030.1 | Thale cress | mitochondrion | 25.52 | 18.86 |
| AT1G28210.2 | Thale cress | mitochondrion | 23.44 | 18.5 |
| AT3G17830.1 | Thale cress | plastid | 28.19 | 18.38 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:19.1.5.2 | Gene3D:2.60.260.20 | EntrezGene:816578 | UniProt:A0A178VWR5 | ProteinID:AAD25656.1 |
| ProteinID:AEC07028.1 | ArrayExpress:AT2G20560 | EnsemblPlantsGene:AT2G20560 | RefSeq:AT2G20560 | TAIR:AT2G20560 | RefSeq:AT2G20560-TAIR-G |
| EnsemblPlants:AT2G20560.1 | TAIR:AT2G20560.1 | EMBL:AY057555 | EMBL:AY086509 | EMBL:AY133644 | Unigene:At.26315 |
| InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR001623 |
| InterPro:IPR036869 | InterPro:J_dom_sf | RefSeq:NP_179646.1 | ProteinID:OAP09831.1 | ProteinID:OAP09832.1 | PFAM:PF00226 |
| PFAM:PF01556 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00625 | ScanProsite:PS00636 |
| PFscan:PS50076 | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | UniProt:Q9SIL3 | SMART:SM00271 | SUPFAM:SSF46565 |
| SUPFAM:SSF49493 | UniParc:UPI00000A6F9A | SEG:seg | : | : | : |
Description
At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
Coordinates
chr2:-:8848130..8850111
Molecular Weight (calculated)
37111.2 Da
IEP (calculated)
9.286
GRAVY (calculated)
-0.602
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.