Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68815 | Canola | cytoskeleton, cytosol, nucleus | 92.88 | 89.82 |
| Bra001337.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 92.57 | 89.52 |
| CDY58657 | Canola | cytosol | 89.78 | 88.96 |
| CDY22173 | Canola | cytosol | 91.95 | 88.39 |
| Bra040063.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 89.16 | 88.34 |
| CDY07893 | Canola | cytosol | 88.24 | 88.24 |
| CDY64940 | Canola | nucleus | 89.16 | 87.8 |
| Bra029729.1-P | Field mustard | nucleus | 88.85 | 87.5 |
| CDY27963 | Canola | cytosol | 87.31 | 85.71 |
| AT5G01390.1 | Thale cress | cytosol | 83.28 | 80.3 |
| VIT_08s0105g00350.t01 | Wine grape | cytosol | 81.73 | 78.11 |
| KRG88624 | Soybean | nucleus | 81.42 | 78.04 |
| KRH65726 | Soybean | nucleus | 81.42 | 78.04 |
| PGSC0003DMT400059397 | Potato | cytosol | 81.42 | 77.35 |
| Solyc09g005350.2.1 | Tomato | nucleus, plastid | 81.42 | 77.35 |
| KRH75968 | Soybean | nucleus | 79.26 | 75.96 |
| AT2G20560.1 | Thale cress | cytosol | 69.66 | 66.77 |
| AT4G28480.1 | Thale cress | cytoskeleton, cytosol, nucleus | 70.59 | 65.52 |
| Zm00001d010958_P001 | Maize | cytosol | 64.09 | 63.5 |
| EES17644 | Sorghum | cytosol | 60.99 | 62.94 |
| TraesCS1A01G070300.1 | Wheat | cytosol | 61.92 | 59.0 |
| TraesCS1D01G072800.1 | Wheat | nucleus | 61.61 | 57.85 |
| TraesCS1B01G088700.1 | Wheat | cytosol | 61.92 | 57.64 |
| AT1G59725.1 | Thale cress | cytoskeleton, cytosol, nucleus | 56.97 | 55.59 |
| AT5G25530.1 | Thale cress | cytosol | 59.13 | 55.04 |
| AT1G10350.1 | Thale cress | cytosol | 58.51 | 54.15 |
| AT3G47940.1 | Thale cress | cytosol | 57.28 | 52.86 |
| HORVU1Hr1G015040.2 | Barley | plastid | 61.3 | 51.7 |
| GSMUA_Achr6P15600_001 | Banana | cytosol | 69.35 | 50.68 |
| AT2G20550.2 | Thale cress | cytosol | 43.03 | 48.94 |
| HORVU1Hr1G015060.2 | Barley | plastid | 33.13 | 37.54 |
| AT3G62600.1 | Thale cress | endoplasmic reticulum, golgi | 38.39 | 35.84 |
| AT1G44160.1 | Thale cress | mitochondrion | 33.13 | 29.97 |
| AT3G44110.1 | Thale cress | nucleus | 35.6 | 27.38 |
| AT5G22060.1 | Thale cress | cytosol | 35.29 | 27.21 |
| AT1G11040.1 | Thale cress | cytosol, nucleus, plastid | 33.44 | 24.66 |
| AT2G22360.1 | Thale cress | plastid | 29.72 | 21.72 |
| AT4G39960.1 | Thale cress | mitochondrion, plastid | 29.41 | 21.25 |
| AT5G48030.1 | Thale cress | mitochondrion | 27.24 | 19.3 |
| AT1G80030.2 | Thale cress | plastid | 28.79 | 18.6 |
| AT1G28210.2 | Thale cress | mitochondrion | 23.22 | 17.56 |
| AT3G17830.1 | Thale cress | plastid | 27.24 | 17.02 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:19.1.5.2 | Gene3D:2.60.260.20 | EntrezGene:820040 | UniProt:A0A178VM88 | ProteinID:AAF07844.1 |
| ProteinID:AEE74694.1 | ArrayExpress:AT3G08910 | EnsemblPlantsGene:AT3G08910 | RefSeq:AT3G08910 | TAIR:AT3G08910 | RefSeq:AT3G08910-TAIR-G |
| EnsemblPlants:AT3G08910.1 | TAIR:AT3G08910.1 | EMBL:BT044615 | InterPro:DnaJ_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0051082 | InterPro:HSP40/DnaJ_pept-bd | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | RefSeq:NP_187503.1 |
| ProteinID:OAP06551.1 | PFAM:PF00226 | PFAM:PF01556 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PRINTS:PR00625 |
| ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR24078 | PANTHER:PTHR24078:SF298 | UniProt:Q9SR91 | SMART:SM00271 |
| SUPFAM:SSF46565 | SUPFAM:SSF49493 | UniParc:UPI00000A6960 | SEG:seg | : | : |
Description
At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
Coordinates
chr3:-:2710065..2712042
Molecular Weight (calculated)
35798.5 Da
IEP (calculated)
9.806
GRAVY (calculated)
-0.632
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.