Factsheet for PGSC0003DMT400059397

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005350.2.1	Tomato	nucleus, plastid	99.71	99.71
KRG88624	Soybean	nucleus	83.82	84.57
KRH65726	Soybean	nucleus	83.53	84.27
VIT_08s0105g00350.t01	Wine grape	cytosol	83.24	83.73
KRH75968	Soybean	nucleus	82.35	83.09
CDY64940	Canola	nucleus	79.71	82.62
Bra029729.1-P	Field mustard	nucleus	79.41	82.32
CDY68815	Canola	cytoskeleton, cytosol, nucleus	80.0	81.44
AT3G08910.1	Thale cress	nucleus	77.35	81.42
Bra001337.1-P	Field mustard	cytoskeleton, cytosol, nucleus	79.71	81.14
CDY27963	Canola	cytosol	77.94	80.55
CDY07893	Canola	cytosol	76.47	80.5
CDY58657	Canola	cytosol	77.06	80.37
CDY22173	Canola	cytosol	79.12	80.06
Bra040063.1-P	Field mustard	cytoskeleton, cytosol, nucleus	75.88	79.14
AT5G01390.1	Thale cress	cytosol	75.29	76.42
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	72.06	71.64
PGSC0003DMT400081223	Potato	cytosol	70.0	69.79
Zm00001d010958_P001	Maize	cytosol	62.94	65.64
EES17644	Sorghum	cytosol	60.29	65.5
PGSC0003DMT400007444	Potato	cytosol	56.18	61.61
PGSC0003DMT400083824	Potato	cytosol	57.94	60.8
TraesCS1A01G070300.1	Wheat	cytosol	59.41	59.59
PGSC0003DMT400083040	Potato	cytosol	58.82	59.35
PGSC0003DMT400045398	Potato	mitochondrion	54.12	59.16
TraesCS1D01G072800.1	Wheat	nucleus	59.12	58.43
TraesCS1B01G088700.1	Wheat	cytosol	59.41	58.21
HORVU1Hr1G015040.2	Barley	plastid	60.29	53.52
GSMUA_Achr6P15600_001	Banana	cytosol	69.41	53.39
HORVU1Hr1G015060.2	Barley	plastid	32.06	38.25
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	36.47	35.94
PGSC0003DMT400062759	Potato	cytosol	34.71	34.01
PGSC0003DMT400005019	Potato	cytosol	36.18	29.36
PGSC0003DMT400007728	Potato	nucleus	35.88	29.12
PGSC0003DMT400065401	Potato	nucleus	35.59	28.88
PGSC0003DMT400060145	Potato	cytosol	35.59	28.88
PGSC0003DMT400018083	Potato	nucleus	35.59	28.88
PGSC0003DMT400066980	Potato	nucleus	35.59	28.81
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	28.53	25.19
PGSC0003DMT400032760	Potato	plastid	30.88	23.6
PGSC0003DMT400064990	Potato	mitochondrion	26.18	20.09
PGSC0003DMT400036786	Potato	plastid	27.65	17.67

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102604715	MapMan:19.1.5.2	Gene3D:2.60.260.20	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:M1C475	PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400023077	PGSC:PGSC0003DMG400023077	EnsemblPlants:PGSC0003DMT400059397
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF298	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI000294E245	RefSeq:XP_006365599.1	SEG:seg	:

Description

Protein SIS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400023077]

Coordinates

chr9:-:8335982..8343635

Molecular Weight (calculated)

37424.5 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.680

Length

340 amino acids

Sequence
(BLAST)

001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYDVLSDP QKRVVYDQYG EEGLKGQVPP PGAGGFSGPS DGGGHGSFRF
101: NPRSADDIFS EFFGFSTPYG GMGDMGGRAG GPSFSRGMFG EDIFTSFRNA AGEGASGNAP RKAAPIERNL PCSLEDLYKG TTKKMKISRE VTDATGRPST
201: TEEILTIDIK PGWKKGTKIT FPEKGNEQRG IIPSDLVFII DEKPHSVFKR DGNDLVVTQK IPLVEALTGY TAQITTLDGR NLTVPINSII SPNYEEVIKG
301: EGMPIPKEPS RKGNLRVKFN IKFPSKLTSE QKAGIKRYLT

Best Arabidopsis Sequence Match ( AT3G08910.1 )
(BLAST)

001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS

Arabidopsis Description

At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.