Factsheet for PGSC0003DMT400065401

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009770.2.1	Tomato	nucleus	98.57	98.8
PGSC0003DMT400060145	Potato	cytosol	90.45	90.45
PGSC0003DMT400005019	Potato	cytosol	89.5	89.5
VIT_06s0080g01230.t01	Wine grape	cytosol	86.4	86.81
VIT_13s0073g00560.t01	Wine grape	cytosol	85.68	86.3
KXG37403	Sorghum	cytosol	85.92	86.12
Os03t0787300-01	Rice	plasma membrane	85.44	85.85
KRH25334	Soybean	nucleus	84.73	85.13
Zm00001d034368_P001	Maize	extracellular, plasma membrane	84.73	84.93
KRG88903	Soybean	nucleus	84.25	84.65
Zm00001d013111_P001	Maize	extracellular, plasma membrane	84.25	84.65
KRH22611	Soybean	nucleus	84.01	84.41
TraesCS5A01G426100.1	Wheat	nucleus	83.77	83.37
TraesCS5B01G428000.1	Wheat	nucleus	83.77	83.37
TraesCS5D01G434100.1	Wheat	nucleus	83.77	83.37
KRH26709	Soybean	nucleus	82.82	83.21
HORVU5Hr1G103680.1	Barley	cytosol	83.29	82.9
CDX92386	Canola	nucleus	82.1	81.52
Bra002385.1-P	Field mustard	nucleus	81.86	81.28
CDX92385	Canola	nucleus	81.62	81.04
CDY65546	Canola	nucleus	81.38	81.0
AT3G44110.1	Thale cress	nucleus	81.15	80.95
Bra002386.1-P	Field mustard	nucleus	81.38	80.81
PGSC0003DMT400007728	Potato	nucleus	80.43	80.43
CDY09117	Canola	nucleus	80.43	79.67
Bra020169.1-P	Field mustard	nucleus	80.19	79.43
AT5G22060.1	Thale cress	cytosol	78.76	78.76
Zm00001d006666_P001	Maize	nucleus	54.18	77.47
Bra006608.1-P	Field mustard	nucleus	74.7	76.72
CDX88812	Canola	nucleus	74.7	76.72
Zm00001d048538_P001	Maize	nucleus	59.43	76.62
CDX70980	Canola	nucleus	72.55	74.69
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	32.7	74.46
Zm00001d006230_P001	Maize	cytosol	51.07	73.79
Zm00001d045645_P001	Maize	cytosol	46.54	73.31
CDY16617	Canola	nucleus	35.8	72.12
PGSC0003DMT400066980	Potato	nucleus	72.08	71.9
PGSC0003DMT400018083	Potato	nucleus	70.64	70.64
HORVU6Hr1G065410.3	Barley	cytosol, mitochondrion	48.45	69.52
Zm00001d006563_P001	Maize	mitochondrion	44.39	68.38
Zm00001d026185_P001	Maize	endoplasmic reticulum	76.61	63.82
Zm00001d004840_P001	Maize	mitochondrion	51.07	62.39
PGSC0003DMT400007444	Potato	cytosol	28.4	38.39
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	31.26	37.97
PGSC0003DMT400083824	Potato	cytosol	29.12	37.65
PGSC0003DMT400045398	Potato	mitochondrion	27.92	37.62
PGSC0003DMT400081223	Potato	cytosol	29.36	36.07
PGSC0003DMT400059397	Potato	cytosol	28.88	35.59
PGSC0003DMT400083040	Potato	cytosol	28.4	35.31
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	28.64	35.09
PGSC0003DMT400032760	Potato	plastid	26.73	25.17
PGSC0003DMT400062759	Potato	cytosol	20.53	24.78
PGSC0003DMT400064990	Potato	mitochondrion	25.06	23.7
PGSC0003DMT400036786	Potato	plastid	26.25	20.68
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	13.13	14.29

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102591116	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd
InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:M1CDW4	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400025425
PGSC:PGSC0003DMG400025425	EnsemblPlants:PGSC0003DMT400065401	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938
UniParc:UPI0002969A3B	RefSeq:XP_006367020.1	SEG:seg	:	:	:

Description

DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400025425]

Coordinates

chr4:-:5521479..5526260

Molecular Weight (calculated)

46692.5 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.795

Length

419 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEILGV PNTASPDDLK KAYRKAAIKN HPDKGGDPEK FKEIAQAYEV LNDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFQSFFG
101: GGGFGGGGSS RGRRQRRGED VVHPLKVSLE DLYNGISKKL SLSRNVLCTK CKGAGSKSGA SLKCPGCQGK GMKVSIRQLG PMIQQMQHPC NDCRGTGEKI
201: NEKDRCPQCK GEKVVQEKKV LEVVVDKGMQ NGQKITFPGE ADEEPDTVTG DIVFILQQKE HPKFKRKGDD LFVEHTLTLT EALCGFQFVL THLDNRQLII
301: KSQPGEVVKP DQFKAINDEG MPMYQRPFMK GKLYIHFTVD FPNILTPELC KNLEAVLPAR PKTQASDMEL DECEETTLHD VNIDEEMRRK QQQQAQEAYD
401: EDDDDMHGGG AQRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.