Factsheet for PGSC0003DMT400081223

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
golgi 1
nucleus 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g077670.2.1	Tomato	cytosol	98.24	97.67
KRH10937	Soybean	cytosol	79.47	79.94
KRH21363	Soybean	cytosol	69.79	77.27
CDY65077	Canola	cytosol	75.66	76.79
AT2G20560.1	Thale cress	cytosol	75.66	76.56
Bra031127.1-P	Field mustard	cytosol	75.66	76.33
CDY13869	Canola	cytosol	75.66	76.33
CDY35188	Canola	cytosol	70.97	74.69
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	56.89	73.76
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	73.61	73.39
Bra024199.1-P	Field mustard	cytoskeleton, cytosol, nucleus	68.92	73.21
CDY29908	Canola	cytoskeleton, cytosol, nucleus	68.92	73.21
CDY38388	Canola	cytosol	73.31	73.1
CDX92876	Canola	cytoskeleton, cytosol, nucleus	67.45	72.33
Bra011031.1-P	Field mustard	cytosol	74.19	71.88
AT4G28480.1	Thale cress	cytoskeleton, cytosol, nucleus	73.02	71.55
CDX97443	Canola	cytosol	62.76	71.1
PGSC0003DMT400059397	Potato	cytosol	69.79	70.0
PGSC0003DMT400083824	Potato	cytosol	57.18	60.19
PGSC0003DMT400007444	Potato	cytosol	53.67	59.03
PGSC0003DMT400045398	Potato	mitochondrion	52.79	57.88
PGSC0003DMT400083040	Potato	cytosol	56.89	57.57
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	35.48	35.07
PGSC0003DMT400062759	Potato	cytosol	34.9	34.29
PGSC0003DMT400060145	Potato	cytosol	36.95	30.07
PGSC0003DMT400007728	Potato	nucleus	36.36	29.59
PGSC0003DMT400066980	Potato	nucleus	36.36	29.52
PGSC0003DMT400018083	Potato	nucleus	36.07	29.36
PGSC0003DMT400065401	Potato	nucleus	36.07	29.36
PGSC0003DMT400005019	Potato	cytosol	35.78	29.12
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	28.45	25.19
PGSC0003DMT400032760	Potato	plastid	30.21	23.15
PGSC0003DMT400064990	Potato	mitochondrion	25.51	19.64
PGSC0003DMT400036786	Potato	plastid	29.03	18.61

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102578742	MapMan:19.1.5.2	Gene3D:2.60.260.20	ncoils:Coil	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	UniProt:M1D4E4	PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400031750	PGSC:PGSC0003DMG400031750
EnsemblPlants:PGSC0003DMT400081223	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF520
SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI0002966990	RefSeq:XP_006364303.1	SEG:seg

Description

Protein SIS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031750]

Coordinates

chr2:-:33275711..33279567

Molecular Weight (calculated)

37599.9 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.573

Length

341 amino acids

Sequence
(BLAST)

001: MGVDYYKILQ VDKSATDDEL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYEVLSDS QKRAIYDQYG EEGLKGQVPP PDAAAGGPGG ATYFHTGDGP
101: NVFRFNPRNA NDIFAEFFGF QTPFGGGMGG GGGGMRGARF SSSMFGDDIF SSFGEGRPAI RKAPPIERTV PCSLEELYNG TTKKMKISRE IADASGKTLP
201: VEEILTIIIK PGWKKGTKIT FTEKGNEEPN VLPADLVFTI DQKPHSVFTR DGNDLVINQN ISLVEALTGY TAHVTTLDGR KLTIPINKVI HPNYEEIVPK
301: EGMPIPKDPS KRGNLRIKFD IKFPTRLTAD QKTGIKKLLP S

Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)

001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG

Arabidopsis Description

At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.