Factsheet for PGSC0003DMT400045398

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006820.2.1	Tomato	plastid	98.07	98.07
PGSC0003DMT400007444	Potato	cytosol	78.46	78.71
KRH69388	Soybean	cytosol	55.63	62.68
VIT_01s0026g01450.t01	Wine grape	cytosol	54.98	62.64
KRH74747	Soybean	cytosol	55.63	62.45
PGSC0003DMT400083040	Potato	cytosol	67.52	62.31
CDY20944	Canola	cytosol	60.13	61.31
KRG99186	Soybean	cytosol	56.27	60.55
CDY45143	Canola	cytoskeleton, cytosol, nucleus	64.31	60.42
KRH45833	Soybean	cytosol	55.95	60.21
AT1G59725.1	Thale cress	cytoskeleton, cytosol, nucleus	63.99	60.12
CDY30900	Canola	cytoskeleton, cytosol, nucleus	64.63	59.64
CDY20637	Canola	cytosol	61.09	59.38
Bra027838.1-P	Field mustard	cytoskeleton, cytosol, nucleus	64.63	59.12
CDY37986	Canola	cytosol	43.73	57.63
AT1G10350.1	Thale cress	cytosol	63.67	56.73
Bra018443.1-P	Field mustard	nucleus	61.41	54.73
PGSC0003DMT400083824	Potato	cytosol	56.59	54.32
PGSC0003DMT400059397	Potato	cytosol	59.16	54.12
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	58.2	52.92
PGSC0003DMT400081223	Potato	cytosol	57.88	52.79
KRH60063	Soybean	endoplasmic reticulum, golgi	31.83	50.0
PGSC0003DMT400062759	Potato	cytosol	36.01	32.28
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	34.41	31.01
PGSC0003DMT400060145	Potato	cytosol	37.94	28.16
PGSC0003DMT400007728	Potato	nucleus	37.94	28.16
PGSC0003DMT400005019	Potato	cytosol	37.94	28.16
PGSC0003DMT400065401	Potato	nucleus	37.62	27.92
PGSC0003DMT400018083	Potato	nucleus	36.98	27.45
PGSC0003DMT400066980	Potato	nucleus	36.98	27.38
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	29.9	24.16
PGSC0003DMT400032760	Potato	plastid	31.19	21.8
PGSC0003DMT400064990	Potato	mitochondrion	26.37	18.51
PGSC0003DMT400036786	Potato	plastid	27.65	16.17

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102592944	Gene3D:2.60.260.20	MapMan:35.1	InterPro:DnaJ_C	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:M1BHL5	PFAM:PF00226	PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400017615	PGSC:PGSC0003DMG400017615	EnsemblPlants:PGSC0003DMT400045398
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078	PANTHER:PTHR24078:SF175	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI000296A046	RefSeq:XP_006357245.1	SEG:seg	:

Description

Potyviral capsid protein interacting protein 2a [Source:PGSC_GENE;Acc:PGSC0003DMG400017615]

Coordinates

chr5:-:6199508..6204511

Molecular Weight (calculated)

34570.3 Da

IEP (calculated)

9.710

GRAVY (calculated)

-0.645

Length

311 amino acids

Sequence
(BLAST)

001: MGVDYYNLLK VSRNASEEDL KRSYKRLAMK WHPDKNSQNN KEAEAKFKQI SEAYDVLSDP QKRQIYDLYG EDALKSGQFT SASPTSAGSG TGNGRGFRFN
101: TRDAEDIFAE IFGGSEGFSS GSGAGVGRKA APVENKLPCS LEELYKGSRR KMKISRILLD DSGKPTTVEE VLAIHIKPGW KKGTKITFPE KGDYEYGAAP
201: GDLIFVIDEK PHALFKRDGN DLVMNQKISL LDALTGKTIS LTTLDGRELT IPIKEIVKPG QELIIQNEGM PISKERGKKG NLKIKFDIKF PSRLNADQKS
301: DLRRVLCRSI D

Best Arabidopsis Sequence Match ( AT1G10350.1 )
(BLAST)

001: MGVDYYNVLK VNRNANEDDL KKSYRRMAMK WHPDKNPTSK KEAEAKFKQI SEAYDVLSDP QRRQIYDQYG EEGLKSTDLP TAAETAAHQQ QRSYSSSNSE
101: FRYYPRDAED IFAEFFGESG DAFGGGSSGR TRGDGGDGGG RRFKSAEAGS QANRKTPPTN KKTTPPANRK APAIESKLAC TLEELYKGAK KKMRISRVVP
201: DDFGKPKTVQ EILKIDIKPG WKKGTKITFP EKGNQEPGVT PADLIFVVDE KPHSVFKRDG NDLILEKKVS LIDALTGLTI SVTTLDGRSL TIPVLDIVKP
301: GQEIVIPNEG MPTKDPLKRG DLRVTFEILF PSRLTSEQKN DLKRVLGGS

Arabidopsis Description

DNAJ heat shock family protein [Source:UniProtKB/TrEMBL;Acc:Q9SY77]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.