Factsheet for PGSC0003DMT400060145

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44110.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055160.2.1	Tomato	nucleus	98.81	98.81
PGSC0003DMT400005019	Potato	cytosol	92.12	92.12
VIT_06s0080g01230.t01	Wine grape	cytosol	90.93	91.37
VIT_13s0073g00560.t01	Wine grape	cytosol	89.98	90.62
PGSC0003DMT400065401	Potato	nucleus	90.45	90.45
KRH25334	Soybean	nucleus	88.78	89.21
KRH22611	Soybean	nucleus	88.54	88.97
KRG88903	Soybean	nucleus	88.31	88.73
KRH26709	Soybean	nucleus	87.83	88.25
CDX92386	Canola	nucleus	84.73	84.12
Bra002385.1-P	Field mustard	nucleus	84.73	84.12
AT3G44110.1	Thale cress	nucleus	84.25	84.05
CDX92385	Canola	nucleus	84.49	83.89
Bra002386.1-P	Field mustard	nucleus	84.25	83.65
CDY65546	Canola	nucleus	83.77	83.37
CDY09117	Canola	nucleus	83.53	82.74
PGSC0003DMT400007728	Potato	nucleus	82.58	82.58
AT5G22060.1	Thale cress	cytosol	82.58	82.58
Bra020169.1-P	Field mustard	nucleus	83.29	82.51
CDX88812	Canola	nucleus	76.61	78.68
Bra006608.1-P	Field mustard	nucleus	76.61	78.68
CDX70980	Canola	nucleus	74.7	76.9
CDY16617	Canola	nucleus	36.99	74.52
PGSC0003DMT400066980	Potato	nucleus	72.79	72.62
PGSC0003DMT400018083	Potato	nucleus	71.6	71.6
PGSC0003DMT400007444	Potato	cytosol	28.88	39.03
PGSC0003DMT400083824	Potato	cytosol	30.07	38.89
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	31.5	38.26
PGSC0003DMT400045398	Potato	mitochondrion	28.16	37.94
PGSC0003DMT400081223	Potato	cytosol	30.07	36.95
PGSC0003DMT400024267	Potato	cytoskeleton, cytosol, nucleus	29.12	35.67
PGSC0003DMT400083040	Potato	cytosol	28.64	35.61
PGSC0003DMT400059397	Potato	cytosol	28.88	35.59
PGSC0003DMT400062759	Potato	cytosol	21.24	25.65
PGSC0003DMT400032760	Potato	plastid	27.21	25.62
PGSC0003DMT400064990	Potato	mitochondrion	25.78	24.38
PGSC0003DMT400036786	Potato	plastid	27.92	21.99
PGSC0003DMT400045241	Potato	extracellular, mitochondrion	14.56	15.84

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102577512	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ProteinID:ABA46776
ProteinID:ABA46776.1	ProteinID:ABB16980	ProteinID:ABB16980.1	ProteinID:ABB16989	ProteinID:ABB16989.1	ProteinID:ABB55383
ProteinID:ABB55383.1	ProteinID:CAA63965	ProteinID:CAA63965.1	ncoils:Coil	EMBL:DQ200383	EMBL:DQ228331
EMBL:DQ228340	EMBL:DQ252506	InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072
GO:GO:0046872	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	EnsemblPlantsGene:PGSC0003DMG400023400	PGSC:PGSC0003DMG400023400	EnsemblPlants:PGSC0003DMT400060145	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF4	UniProt:Q38HT9	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	UniParc:UPI00005D3B5C	EMBL:X94301	RefSeq:XP_006345881.1
SEG:seg	:	:	:	:	:

Description

DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400023400]

Coordinates

chr5:-:50876142..50880549

Molecular Weight (calculated)

46696.6 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.806

Length

419 amino acids

Sequence
(BLAST)

001: MFGRAPKKSD NTKYYEILGV PKTAAPEDLK KAYRKAAIKN HPDKGGDPEK FKELAQAYEV LSDPEKREIY DQYGEDALKE GMGGGGGGHD PFDIFSSFFG
101: GSPFGGGGGS SRGRRQRRGE DVVHPLKVSL EDLYNGTSKK LSLSRNVLCS KCKGKGSKSG ASMKCSGCQG SGMKVTIRQL GPSMIQQMQH PCNECKGTGE
201: MINDKDRCGQ CKGEKVVQEK KVLEVVVEKG MQNGQKITFP GEADEAPDTV TGDIVFVLQQ KEHPKFKRKG DDLFVEHTLS LTEALCGFQF ILTHLDNRQL
301: IIKPQPGEVV KPDQFKAIND EGMPMYQRPF MRGKLYIHFT VEFPDTLSPE QCKNLEAVLP PKPKTQMTDM ELDECEETTL HDVNIEEEMR RKQQQAQEAY
401: DEDDEDMHGG AQRVQCAQQ

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.